Protein Alignment ems and hoxb2

DIOPT Version :10

• Sequence 1: NP_731868.1
• Gene: ems / 41697
• FlyBaseID: FBgn0000576
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_012808332.1
• Gene: hoxb2 / 100038155
• XenbaseID: XB-GENE-478525
• Length: 340
• Species: Xenopus tropicalis
• Alignment Length: 300
• Identity: 80/300 - (26%)
• Similarity: 108/300 - (36%)
• Gaps: 96/300 - (32%)

  Fly   212 SSQPS------SSPTLL-------ISSPHATPPQQQQQQPPPNYPKPAMMHPGGA-----GPMMM 258
            :||||      |.|.:|       |......||..:|..|..|....:.:.|...     |.:..
 Frog    13 NSQPSLAECLTSFPAVLETFQTSSIKDSTLIPPPFEQTIPSLNPGSDSQIRPKSQKRAENGLLQQ 77

  Fly   259 PGMPPAGLVRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQ 323
            |.:.|..|...||.........:...|.|  :||.|    |||
 Frog    78 PQVQPGHLATEFPWMKEKKSAKKSSQGSP--QALIP----PPE---------------------- 114

  Fly   324 AGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFRKP 388
                        :|.|.|...      ||:                    |...|.        .
 Frog   115 ------------SAGGSPAEP------PGL--------------------HDAGGG--------S 133

  Fly   389 KRIRTAFSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKRM-QQEDEK 452
            :|:|||::.:|||:||..|..|:|:....|..:|..|:|:|.||||||||||.||||. |.:|.:
 Frog   134 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHKDSQ 198

  Fly   453 GGEGGSQRNMHNGS--GDEDDDELIDMEMDECPSDEEHEL 490
            .|| .|..|..:|.  .|.||..:....:|...|..|.|:
 Frog   199 DGE-HSYSNPEDGEPLDDGDDSPVYHQGLDSNDSLREQEI 237

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ems	NP_731868.1	Homeodomain	389..445	CDD:459649	29/55 (53%)
hoxb2	XP_012808332.1	Homeodomain	134..190	CDD:459649	29/55 (53%)