DRSC/TRiP Functional Genomics Resources

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Protein Alignment ems and barhl2

DIOPT Version :10

Sequence 1:NP_731868.1 Gene:ems / 41697 FlyBaseID:FBgn0000576 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_991303.1 Gene:barhl2 / 100001699 ZFINID:ZDB-GENE-050913-153 Length:364 Species:Danio rerio


Alignment Length:461 Identity:104/461 - (22%)
Similarity:137/461 - (29%) Gaps:209/461 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 FSIESIV-----GNDVSTAG----GNS--TPDLSGPQSPPP-GERNVPGSPPQTPPATLTLIPGS 78
            |.|::|:     |..|...|    |:|  |.|.....:|.| .|.:..|:.|.:|.:..      
Zfish     9 FGIDTILSTTNSGTSVLMNGDFRLGDSSRTADFRSQATPSPCSEIDTVGTAPSSPISVT------ 67

  Fly    79 PPHHLMAPPAHGLPYPHPHAQQQHLQAPHPHPHLSPAQQHVL--HQHLLMQQQ-HPGTPKSHQDI 140
                        :.:|.||..|..||..|.|.|.|.||...|  ..|||.|.. .|.|..|...|
Zfish    68 ------------MEHPEPHLVQDSLQHHHHHHHHSQAQSLQLSPQPHLLGQAGCAPRTATSSFLI 120

  Fly   141 QELLQRLHHNAAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAP----PAMEQAENPAQRIQPP 201
            :::|          ....||.......|..|....|.|.|...||    |.:||.||.::.    
Zfish   121 KDIL----------GDSKPLAACAPYSTSVPSPHHSPKTESGTAPDGIRPKLEQDENRSKL---- 171

  Fly   202 HTPPKSVSPQSSQPSSSPTLLISSPHATPPQQQQQQPPPNYPKPAMMHPGGAGPMMMPGMPPAGL 266
               .|....||                                                      
Zfish   172 ---DKRDDIQS------------------------------------------------------ 179

  Fly   267 VRPFPMGPGGPPMPQGQPGLPDIKALPPYINAPPELPPQHNPHLIAAAQFQMAAALQAGHVLGPA 331
                                 |:|.|    |...|    .....|::                  
Zfish   180 ---------------------DLKCL----NGTKE----EGDREISS------------------ 197

  Fly   332 AAAAAAAGLPPHAAQFMPNPGMARDSYQLYPWLLSRHGRIFPHRFPGSFLVPPFR--KPKRIRTA 394
                                  :|||                         ||.|  ||::.|||
Zfish   198 ----------------------SRDS-------------------------PPVRSKKPRKARTA 215

  Fly   395 FSPSQLLKLEHAFESNQYVVGAERKALAQNLNLSETQVKVWFQNRRTKHKR-----MQQEDEKGG 454
            ||..||.:||.:||..:|:...:|..||..|||::||||.|:||||||.||     ::...|.|.
Zfish   216 FSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGN 280

  Fly   455 EGGSQR 460
            ....||
Zfish   281 YSALQR 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
emsNP_731868.1 Homeodomain 389..445 CDD:459649 29/55 (53%)
barhl2NP_991303.1 Homeodomain 210..266 CDD:459649 29/55 (53%)

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