DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and PCH2

DIOPT Version :9

Sequence 1:NP_001287318.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_009745.2 Gene:PCH2 / 852484 SGDID:S000000390 Length:564 Species:Saccharomyces cerevisiae


Alignment Length:491 Identity:101/491 - (20%)
Similarity:177/491 - (36%) Gaps:161/491 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 LVSFETDFLQKKTTT-QE--------------PYDSDE-----MAKEFLMQFAGMPLTVGQTLVF 144
            |.||..|.|:....| ||              |.::.:     :||..|.||:.:...|  ..|.
Yeast    59 LESFPKDRLKTSIITGQELMREGQGSIEIKDPPTEAQQHLIRSLAKVLLHQFSSINGKV--NTVN 121

  Fly   145 QFKDKKFLGLAVKTL---------------------------EAVDPRTVGDS------------ 170
            :.:|..||.|.||.:                           ..:|.....:|            
Yeast   122 EGQDNLFLSLFVKKISIEQQSTSHVSIKLNFHEKINLGQHIDSILDSEETNESDTYHMGSVDEFI 186

  Fly   171 ------LPKTRNVRFGRILGNTVVQFEKAE--------------NSVLNLQGRSKGKIVRQSI-- 213
                  |.:...::.|.||.   .:|:|.:              |:.:|..|.....:.:|::  
Yeast   187 IYPFCCLEEQDELKNGSILS---TEFDKIDLELDEDDGFEGETLNNCINSVGNFDIPLSKQTLNL 248

  Fly   214 ----------INPDWD---FGKMGIGGLDKEFNAIFRRAFASRVFPPELV--EQLG--------- 254
                      ....|:   ||           |.|..|.::......::.  :|.|         
Yeast   249 VNISYLPGTTFEGQWESLYFG-----------NNIKERLYSYATISLKIARFKQTGDSNQEDITT 302

  Fly   255 -IKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILD-----------------KYVG 301
             |.:.|.:|::||||||||.:.:.:...|:.|. :..:|...:|                 |:.|
Yeast   303 LITNNKLLLVHGPPGTGKTTLCKALCQKLSVRR-EFSDGSDTIDTNYKGIIIELSCARIFSKWFG 366

  Fly   302 ESEANIRRLFAEAEEEEKRLGPNSGLHI-IIFDEIDAICKARGSVAGNSGVHD--TVVNQLLAKI 363
            ||..||..:|.:.||..| :....|:.| ::.||::||..:|.:::..:...|  .|||.||.::
Yeast   367 ESSKNISIVFKDIEELLK-VNEGRGIFICLLIDEVEAIASSRTNLSSRNESTDGIRVVNTLLTQL 430

  Fly   364 DGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRM--------- 419
            |.:::.:|.|.:..:|..|.:|:|.:  .|.:....:..|..:|.:.||.:..:.|         
Yeast   431 DRLKKYHNFLALATSNLLDSLDDAFV--DRADGVFYVGNPTAEGILHILKVCIEEMITSGIILFH 493

  Fly   420 ------RDFNKIASDVDNNEIAAKTKNFSGAELEGL 449
                  :.|||....:....|...|.:.||..:..|
Yeast   494 ARSTGVKFFNKYQDILRKIAIKCSTVDISGRTIRKL 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_001287318.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 15/84 (18%)
AAA 259..404 CDD:214640 45/164 (27%)
AAA 261..402 CDD:278434 44/160 (28%)
AAA 543..674 CDD:214640
P-loop_NTPase 544..>613 CDD:304359
PCH2NP_009745.2 SpoVK 1..487 CDD:223540 93/447 (21%)
P-loop_NTPase 248..465 CDD:422963 54/231 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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