DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and CDC48C

DIOPT Version :10

Sequence 1:NP_788676.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_001326134.1 Gene:CDC48C / 821105 AraportID:AT3G01610 Length:830 Species:Arabidopsis thaliana


Alignment Length:474 Identity:135/474 - (28%)
Similarity:209/474 - (44%) Gaps:91/474 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 DASADIITLVSFETDFLQKKTTTQEPYDSDEMAKEFLMQFAGMPL-----TVGQTLVFQFKDKKF 151
            ||.|:|:::|:       :|...:.|:|...:|: ....|.|..|     ..|:..:.:..|.: 
plant   414 DARAEILSVVA-------QKLRLEGPFDKKRIAR-LTPGFVGADLESVAYLAGRKAIKRILDSR- 469

  Fly   152 LGLAVKTLEAVD------------PRTVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRS 204
                 |:.::.|            |.   :.|.|         |...:..||:|.|.|       
plant   470 -----KSEQSGDGEDDKSWLRMPWPE---EELEK---------LFVKMSDFEEAVNLV------- 510

  Fly   205 KGKIVRQSI-INPD--WDFGKMGIGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGP 266
            :..:.|:.. |.||  ||    .:|||| .....|.|.....:..|::.:..|:....|.|||||
plant   511 QASLTREGFSIVPDVKWD----DVGGLD-HLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGP 570

  Fly   267 PGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIII 331
            ||.||||:|:.......|....| .|.::|:|||||||..||.||..|    :...|    .:|.
plant   571 PGCGKTLIAKAAANEAGANFMHI-KGAELLNKYVGESELAIRTLFQRA----RTCAP----CVIF 626

  Fly   332 FDEIDAICKARGSVAGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEV 396
            |||:||:..:||.  ..:.|.:.::||.|.::||.|: .|:.|||.|||.|::|.|.|||||...
plant   627 FDEVDALTTSRGK--EGAWVVERLLNQFLVELDGGER-RNVYVIGATNRPDVVDPAFLRPGRFGN 688

  Fly   397 QMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKT-KNFSGAELEGLVRAAQSTAMNR 460
            .:.:.|||...|..||....::    ..|...||.:.||... :.||||:|..||:.|...|:..
plant   689 LLYVPLPNADERASILKAIARK----KPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEE 749

  Fly   461 LIKADSKVHVDPEAMEKLRVTRADFLHALDNDIKPA--------FGAAQEMLENLLARGI--INW 515
            :|.:......|...:.:..:....|..|| :.:.|:        :.|....|:..:.|..  :..
plant   750 MIGSSESSEDDVTDITQCTIKTRHFEQAL-SLVSPSVNKQQRRHYDALSTKLQESVGRNTEQVTI 813

  Fly   516 GPPVTELLEDGMLSVQQAK 534
            ||..|  |||   .:::|:
plant   814 GPSFT--LED---EIEKAR 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_788676.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 11/69 (16%)
RecA-like_NSF-SEC18_r1-like 224..400 CDD:410912 68/175 (39%)
CDC48 <225..>611 CDD:273521 104/321 (32%)
CDC48CNP_001326134.1 CDC48 <223..808 CDD:273521 128/448 (29%)
Blue background indicates that the domain is not in the aligned region.

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