DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and Afg2a

DIOPT Version :10

Sequence 1:NP_788676.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_001156983.1 Gene:Afg2a / 57815 MGIID:1927170 Length:893 Species:Mus musculus


Alignment Length:575 Identity:161/575 - (28%)
Similarity:263/575 - (45%) Gaps:94/575 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 IGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKI 289
            ||||:.:..|| |......:..|||.:..||...:|:|||||||||||::||.:...:.| ...:
Mouse   355 IGGLNSQLKAI-REIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGA-YVSV 417

  Fly   290 VNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDT 354
            :|||:|:.|:.||:||.:|::||||....    |:    ||..||:||:|..|  ....|.|...
Mouse   418 INGPEIISKFYGETEARLRQIFAEATLRH----PS----IIFIDELDALCPKR--EGAQSEVEKR 472

  Fly   355 VVNQLLAKIDGVEQLNN---ILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHT 416
            ||..||..:||:....:   :||:|.|||...:|.||.||||.:.::||.:||.|.|:.||.   
Mouse   473 VVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQ--- 534

  Fly   417 KRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIK-----ADSKVHVDPEAME 476
            |.:|....:.:..:...:|.....:.||:|:.|...|...|:.|:::     .||||      ..
Mouse   535 KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRRVLRKQPNLPDSKV------AG 593

  Fly   477 KLRVTRADFLHALDNDIKPAFGAAQEM--------------LEN--LLARGIINWGPPVTELLED 525
            .:::|..|||..: |||:|:  |.:|:              |||  |..:..:.|  |:......
Mouse   594 MVKITLNDFLQGM-NDIRPS--AMREVAIDVPNVSWSDIGGLENIKLKLKQAVEW--PLKHPKSF 653

  Fly   526 GMLSVQQAKATESSGLVSVLIEGAPNSGKSALAANLAQLSDFPFVKVCSPEDM---VGFTESAKC 587
            ..:.:|..|        .||:.|.|...|:.:|..||..|...|:.:..||.|   ||.:|.|  
Mouse   654 NRMGIQPPK--------GVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERA-- 708

  Fly   588 LHIRKIFDDAYRSTLSCIVVDNVERLLDYGPIGPRYSNLTLQALLVLLKKQP--PKGRKLLILCT 650
              :|:||..|.....|.|..|.::.|...........|:..:.|..||.:..  .:.:.:.:|..
Mouse   709 --VREIFRKARAVAPSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAA 771

  Fly   651 SSRRDVLEEMEM---------------LSAFTSVLHVSNLSTPENVLAVLDD----SDLFSPEEL 696
            ::|.|.:::..|               .:....:|::...|.|.:....||:    :|.:|..|:
Mouse   772 TNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEI 836

  Fly   697 QSIARKMAGKRL-------CIGIKKLLALIDMIRQSEPHQRVIKFLSKMEEEGGL 744
            .::.::.|...|       ||..:.....:.::....| :.:.:|....:|:.||
Mouse   837 IAVCKEAALLALEENIKADCIMKRHFTQALSIVTPRIP-ESLRRFYEDYQEKSGL 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_788676.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011
RecA-like_NSF-SEC18_r1-like 224..400 CDD:410912 71/177 (40%)
CDC48 <225..>611 CDD:273521 135/412 (33%)
Afg2aNP_001156983.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38
CDC48_N 64..132 CDD:451359
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..227
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..315
CDC48 <323..889 CDD:273521 159/572 (28%)
Blue background indicates that the domain is not in the aligned region.

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