DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and atad1a

DIOPT Version :10

Sequence 1:NP_788676.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_001004640.1 Gene:atad1a / 368672 ZFINID:ZDB-GENE-030616-593 Length:380 Species:Danio rerio


Alignment Length:362 Identity:91/362 - (25%)
Similarity:157/362 - (43%) Gaps:75/362 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LEAVDPRTVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRSKGKIVRQSIINPDWDFGKM 223
            ::|:||.....|..|.|..:..:.:|...|...:.|.::..|       :|....|...|    .
Zfish    41 VDALDPTQKQKSQAKKRAEQLMKQIGVEGVSLTEYEMNIATL-------LVDPRSIKVTW----R 94

  Fly   224 GIGGLDKEFNAI---------FRRAFA-SRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQI 278
            .:.|||:..:.:         .|..|: |::..|.          ||:|||||||.||||:|:..
Zfish    95 DVAGLDEIISEMQDTVILPFQKRHLFSGSKLLQPP----------KGVLLYGPPGCGKTLIAKAT 149

  Fly   279 GTMLNAREPKIVN--GPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKA 341
            ......|   .:|  ...:.||:.|||:.....:|:.|    .::.|    .||..||||:..:.
Zfish   150 AKASGCR---FINLQASTLTDKWYGESQKLTAAVFSLA----VKIQP----CIIFLDEIDSFLRN 203

  Fly   342 RGSVAGNSGVHDTVV---NQLLAKIDGVEQLNN--ILVIGMTNRRDMIDEALLRPGRLEVQMEIS 401
            |.|:.     |:...   .|.::..||::...|  ::|:|.|||...:|.|:||  |:.....:.
Zfish   204 RSSMD-----HEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILR--RMPTAFHVG 261

  Fly   402 LPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKA-- 464
            |||...|.:||.:    :.....:::.::..|||::::.:||::|:.|.|.|....:...::.  
Zfish   262 LPNAAQREEILRL----ILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRDYVRKQQ 322

  Fly   465 -----------DSKVHVDPEAMEKLRVTRADFLHALD 490
                       :.:.|||...:..  ||:.|.|..||
Zfish   323 MKQIAQQFQLDEEEEHVDSRQLRP--VTQLDLLFGLD 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_788676.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 3/10 (30%)
RecA-like_NSF-SEC18_r1-like 224..400 CDD:410912 54/192 (28%)
CDC48 <225..>611 CDD:273521 78/296 (26%)
atad1aNP_001004640.1 SpoVK 1..343 CDD:440232 85/344 (25%)
RecA-like_ATAD1 95..260 CDD:410928 54/192 (28%)
Blue background indicates that the domain is not in the aligned region.

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