DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and Spast

DIOPT Version :10

Sequence 1:NP_788676.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:XP_008762708.1 Gene:Spast / 362700 RGDID:1308494 Length:614 Species:Rattus norvegicus


Alignment Length:344 Identity:104/344 - (30%)
Similarity:164/344 - (47%) Gaps:70/344 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 RTVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRSKGKIVRQSIINPDWDFGKM----GI 225
            ||...|.|.|. ||..:.|.|    |...::::.||            |:|...|.|..    .|
  Rat   295 RTNKPSTPTTA-VRKKKDLKN----FRNVDSNLANL------------IMNEIVDNGTAVKFDDI 342

  Fly   226 GGLDKEFNAIFRRAFASRVFPPELVEQL--GIK-HVKGILLYGPPGTGKTLMARQIGTMLNAREP 287
            .|.:     :.::|....|..|.|..:|  |:: ..:|:||:||||.|||::|:.:....||...
  Rat   343 AGQE-----LAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 402

  Fly   288 KIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDA-ICKARGSVAGNSGV 351
            .| :...:..|||||.|..:|.|||.|.|    |.|:    ||..||:|: :|:.|      .|.
  Rat   403 NI-SAASLTSKYVGEGEKLVRALFAVARE----LQPS----IIFIDEVDSLLCERR------EGE 452

  Fly   352 HDT---VVNQLLAKIDGVEQL--NNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQI 411
            ||.   :..:.|.:.|||:..  :.:||:|.|||...:|||:||  |...::.:|||||:.|:.:
  Rat   453 HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLL 515

  Fly   412 L-NIHTKRMRDFNKIASDVDNNE---IAAKTKNFSGAELEGLVRAAQSTAMN--RLIKADSKVHV 470
            | |:..|:       .|.:...|   :|..|..:||::|..|   |:..|:.  |.:|.:...::
  Rat   516 LKNLLCKQ-------GSPLTQKELAQLARMTDGYSGSDLTAL---AKDAALGPIRELKPEQVKNM 570

  Fly   471 DPEAMEKLRVTRADFLHAL 489
            ....|..:|:  :||..:|
  Rat   571 SASEMRNIRL--SDFTESL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_788676.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 2/4 (50%)
RecA-like_NSF-SEC18_r1-like 224..400 CDD:410912 62/184 (34%)
CDC48 <225..>611 CDD:273521 88/280 (31%)
SpastXP_008762708.1 MIT_spastin 114..193 CDD:239142
RecA-like_spastin 341..504 CDD:410932 62/184 (34%)
AAA_lid_3 531..585 CDD:465537 15/58 (26%)
Vps4_C <578..610 CDD:462762 4/12 (33%)
Blue background indicates that the domain is not in the aligned region.

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