DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and Atad1

DIOPT Version :9

Sequence 1:NP_001287318.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_001030174.1 Gene:Atad1 / 309532 RGDID:1308570 Length:361 Species:Rattus norvegicus


Alignment Length:379 Identity:94/379 - (24%)
Similarity:162/379 - (42%) Gaps:88/379 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LEAVDPRTVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRSKGKI------VRQSIINP- 216
            ::|:||         ||..:         |:.:|....::...|....|:      :...:::| 
  Rat    38 VDAIDP---------TRKQK---------VEAQKQAEKLMKQIGVKNVKLSEYEMSIAAHLVDPL 84

  Fly   217 ----DWDFGKMGIGGLDKEFNAI---------FRRAFA-SRVFPPELVEQLGIKHVKGILLYGPP 267
                .|.    .|.|||.....:         .:..|. ||:..|.          ||:||||||
  Rat    85 NMHVTWS----DIAGLDDVITDLKDTVILPIKKKHLFENSRLLQPP----------KGVLLYGPP 135

  Fly   268 GTGKTLMARQIGTMLNAREP--KIVN-GPQIL-DKYVGESEANIRRLFAEAEEEEKRLGPNSGLH 328
            |.||||:|:     ..|:|.  :.:| .|..| ||:.|||:.....:|:.|    .:|.|:    
  Rat   136 GCGKTLIAK-----ATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLA----IKLQPS---- 187

  Fly   329 IIIFDEIDAICKARGSVAGNSGVHDTVV---NQLLAKIDGVEQLNN--ILVIGMTNRRDMIDEAL 388
            ||..||||:..:.|     :|..|:...   .|.::..||::..::  ::|:|.|||...:|.|:
  Rat   188 IIFIDEIDSFLRNR-----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAI 247

  Fly   389 LRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAA 453
            :|  |:..:..|:.|..:.|..||.:..|.    ..:...||..|:|.:|..|||::|:.:.|.|
  Rat   248 MR--RMPTRFHINQPALKQREAILKLILKN----ENVDRHVDLLEVAQETDGFSGSDLKEMCRDA 306

  Fly   454 QSTAMNRLIKADSKVHVDPEAMEKLRVTRADFLHALDNDIKPAFGAAQEMLENL 507
            ....:...:.:.|:...|.:.:..  |.:.|...|::...|....|.|.:|.::
  Rat   307 ALLCVREYVNSTSEESHDEDEIRP--VQQQDLHRAIEKMKKSKDAAFQSVLTHV 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_001287318.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 3/10 (30%)
AAA 259..404 CDD:214640 50/153 (33%)
AAA 261..402 CDD:278434 48/149 (32%)
AAA 543..674 CDD:214640
P-loop_NTPase 544..>613 CDD:304359
Atad1NP_001030174.1 RecA-like_ATAD1 92..257 CDD:410928 57/194 (29%)
AAA_lid_3 282..321 CDD:407720 12/38 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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