DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nsf2 and Trip13

DIOPT Version :9

Sequence 1:NP_001287318.1 Gene:Nsf2 / 41694 FlyBaseID:FBgn0266464 Length:752 Species:Drosophila melanogaster
Sequence 2:NP_001011930.1 Gene:Trip13 / 292206 RGDID:1308516 Length:432 Species:Rattus norvegicus


Alignment Length:436 Identity:89/436 - (20%)
Similarity:174/436 - (39%) Gaps:90/436 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 DFLQKKTTTQEPYDSDEMAKEFLMQFAGMPLTVGQTLVFQFKDKKFLGLAVKT-------LEAVD 163
            :.||:..:|.:..|..:.....|.:.   .:..|..:..:| |:.||...|::       |:|.|
  Rat    24 EVLQRSGSTAKKEDIKQSVYRLLKRH---NIVFGDYVWTEF-DEPFLTRNVQSVSIVDTELKAKD 84

  Fly   164 PRTVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRSKGKIVRQSIINPDWDFGKMGIGGL 228
            |:.:..|         ...:...:.|..:...|..||...::..|.....:.|..:|     .||
  Rat    85 PQPIDLS---------ACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEF-----HGL 135

  Fly   229 ------DKEFNA-IFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAR- 285
                  |.|..: :......:.:|..:.|:...|...:.:||:||||||||.:.:.:...|..| 
  Rat   136 WDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRL 200

  Fly   286 -------EPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARG 343
                   :...:|...:..|:..||...:.::|.:.::   .:.....|..::.||::::..||.
  Rat   201 SSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQD---LIDDKEALVFVLIDEVESLTAARN 262

  Fly   344 SVAGNSGVHDT--VVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQ 406
            :....:...|.  |||.:|.:||.:::.:|::::..:|..:.||.|.:  .|.:::..|..|:..
  Rat   263 ACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAA 325

  Fly   407 G--------------------RVQILNIHTKRMRDFNKIASDVDNN---------EIAAKTKNFS 442
            .                    |.|:|.:....|..|      ::||         ||:.|::..|
  Rat   326 AIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGF------IENNVSKLSLLLSEISRKSEGLS 384

  Fly   443 GAEL-------EGLVRAAQSTAMNRLIKADSKVHVDPEAMEKLRVT 481
            |..|       ..|...|.|..:...::|.| :.||.:..||.:::
  Rat   385 GRVLRKLPFLAHALYIQAPSVTIEGFLQALS-LAVDKQFEEKKKLS 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nsf2NP_001287318.1 CDC48_N 9..89 CDD:215012
CDC48_2 117..>170 CDD:215011 12/59 (20%)
AAA 259..404 CDD:214640 36/154 (23%)
AAA 261..402 CDD:278434 36/150 (24%)
AAA 543..674 CDD:214640
P-loop_NTPase 544..>613 CDD:304359
Trip13NP_001011930.1 RecA-like_Pch2-like 121..319 CDD:410916 44/207 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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