Protein Alignment Nsf2 and cdc-48.3

DIOPT Version :10

• Sequence 1: NP_788676.1
• Gene: Nsf2 / 41694
• FlyBaseID: FBgn0266464
• Length: 752
• Species: Drosophila melanogaster
• Sequence 2: NP_492211.1
• Gene: cdc-48.3 / 172586
• WormBaseID: WBGene00010562
• Length: 724
• Species: Caenorhabditis elegans
• Alignment Length: 309
• Identity: 114/309 - (36%)
• Similarity: 169/309 - (54%)
• Gaps: 43/309 - (13%)

  Fly   166 TVGDSLPKTRNVRFGRILGNTVVQFEKAENSVLNLQGRSKGKIVRQSII---NPDWDFGKMGIGG 227
            |.||.....:..:|.|  |.|.::      .|.:.:.|.:...:||.|:   |..|:    .|||
 Worm   411 TGGDLCSLLKAAKFAR--GRTHLE------RVNDARKRIRPTGIRQFILEVPNVSWN----DIGG 463

  Fly   228 LDKEFNAIFRRAFASRVFP---PELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKI 289
             ::|.....::|.   ::|   ||..|:.||....|||||||||..|||:||.:     |.|.|:
 Worm   464 -NEELKLEIQQAV---IWPQKHPEAFERFGIDPPAGILLYGPPGCSKTLIARAL-----ASEAKM 519

  Fly   290 ----VNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSG 350
                |.||::..|:||:||..||.||:.|    :::.|.    |:.||||||:..:||| ..:||
 Worm   520 NFLAVKGPELFSKWVGDSEKAIRDLFSRA----RQVAPT----IVFFDEIDAVGSSRGS-EKSSG 575

  Fly   351 VHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIH 415
            |.|.|:.|||.::||:|:.:.::::..|||.|.:|.||||||||:..:.:.||.|..|..||.:.
 Worm   576 VSDRVLAQLLTELDGLEKSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGLPCEVTRRAILEMR 640

  Fly   416 TKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKA 464
            ||:|: |:.....:|  ::..||..:|||||..:.|.|...||...|.|
 Worm   641 TKKMK-FDDTVRTID--KLVEKTSGYSGAELVAVCRTAAMFAMRESIDA 686

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Nsf2	NP_788676.1	CDC48_N	9..89	CDD:215012
		CDC48_2	117..>170	CDD:215011	2/3 (67%)
		RecA-like_NSF-SEC18_r1-like	224..400	CDD:410912	76/182 (42%)
		CDC48	<225..>611	CDD:273521	100/247 (40%)
cdc-48.3	NP_492211.1	CDC48	<247..720	CDD:273521	114/309 (37%)