DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9297 and Hmgn5

DIOPT Version :9

Sequence 1:NP_001262553.1 Gene:CG9297 / 41688 FlyBaseID:FBgn0038181 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_057919.2 Gene:Hmgn5 / 50887 MGIID:1355295 Length:406 Species:Mus musculus


Alignment Length:443 Identity:120/443 - (27%)
Similarity:184/443 - (41%) Gaps:123/443 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VSNNVGFVNADVGPSESECRPYIEKAIHELKTDGVRDGSGELQSDQPRGDDDDDDDDGGH----- 76
            |.:.....||:.|.::     .:|..|.:::.:.|::...|           |.::|||.     
Mouse    68 VKDECNMENAENGEAK-----IMEAPIPKMEAEEVKEQINE-----------DTEEDGGEKKEAV 116

  Fly    77 --SAVDEKDTIEIETVELDSTEDAKSANDLDGDGIPDDEDDDIDGDGIPNEKDDDIDGDGIPNDE 139
              .|.|::....|:.||.|  ||.|...| .|:.:   ||..|:.:|: |||      .|....|
Mouse   117 AAEAKDDELKANIQDVEKD--EDGKEHKD-TGEEV---EDGKIEEEGL-NEK------PGTAKSE 168

  Fly   140 DDDIDGDGIPNEDDDDIDGDGVPNSKDEDIDGDGVPNSKDED--IDGDGKANHEDDDLDGD-GTP 201
            |.::                    ||||:..||   |.|.||  .:||.| ..|.||.:|| ||.
Mouse   169 DAEV--------------------SKDEEEKGD---NEKGEDGKEEGDEK-EEEKDDKEGDTGTE 209

  Fly   202 NHEDEDLDGDGVPNEEDDDLDGDGKINHEDEDLDGDG-VKNDEDEDLDGDGKVNHED---EDL-D 261
            ....|.       |:|.::.||..| ..|::::..:| .:.|..|||       ||:   ||| :
Mouse   210 KEVKEQ-------NKEAEEDDGKCK-EEENKEVGKEGQPEEDGKEDL-------HEEVGKEDLHE 259

  Fly   262 GDGVKNEKDDDLDGDGTNNSQDEDLDGDGVPNEKDDDLDGDGILNEHDGDVDGDGVPNEHDHKDS 326
            .||.:.:.::    ||.....:|| ..:|.|.|     ||...|:|.||:   :|.|.| |.|:.
Mouse   260 EDGKEGQPEE----DGKEIHHEED-GKEGQPEE-----DGKEYLHEEDGE---EGQPKE-DQKEG 310

  Fly   327 GENADDDDDDDDEDDKEAVKKRSKREVDAAPVLDIEAPPSPAEEFPVEEEIVKEASAEEEAEVEA 391
            ....|..:|..:||.||...|...:|              ...|...:|::.:|...|::...|.
Mouse   311 QPEEDGKEDQPEEDGKEGQCKEDGKE--------------GHHEEGGKEDLHEEDGKEKDGGKED 361

  Fly   392 VKEEEPEQEAVQEPEPEPVVEPEAEVQPEPVQQEEEKAESAEAKEE-EKPAPV 443
            .|||..::.||.|...|           ..|:.|||.||:.:.|:: ||..|:
Mouse   362 RKEEGEQEVAVDEGSDE-----------NKVEAEEEGAENKDFKQDGEKEEPL 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9297NP_001262553.1 TSP3 repeat_long 167..205 CDD:275366 17/40 (43%)
EHD_N 539..569 CDD:293485
EHD 574..813 CDD:206740
Hmgn5NP_057919.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..406 120/443 (27%)
HMG14_17 2..93 CDD:279446 6/29 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S11722
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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