DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9297 and srl

DIOPT Version :9

Sequence 1:NP_001262553.1 Gene:CG9297 / 41688 FlyBaseID:FBgn0038181 Length:952 Species:Drosophila melanogaster
Sequence 2:NP_001070999.1 Gene:srl / 449670 ZFINID:ZDB-GENE-061110-91 Length:482 Species:Danio rerio


Alignment Length:459 Identity:197/459 - (42%)
Similarity:288/459 - (62%) Gaps:24/459 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   492 EDELLWEGHIPENRRSRQHITELLQLDEEFNAREKATDNVAEIILRDIKRIYENAVKPLETLYKY 556
            |||::.:..:    |.|.||.|.|:|    .|.|||.|..|  .|:.:::||.|:::|:|..|||
Zfish    20 EDEVVLDSIL----RDRSHIEETLRL----AADEKAGDYAA--ALQRLRKIYHNSIRPMEQAYKY 74

  Fly   557 RDLSNRHFS------------DPEIFSKPLILFMGPWSGGKSSILNYLTDNEYTPNSLRTGAEPS 609
            .:|.....|            |.||.|||::||:||||.||||::|||.....||..|.|||||:
Zfish    75 NELRQHEISAYPGRTLGDSATDGEITSKPMVLFLGPWSVGKSSMINYLLGLLDTPYQLYTGAEPT 139

  Fly   610 PAYFNILMWGNETEVLDGTQLAAD--YTFAGLQKFGQGLEERLRGLKMKSKILEKVNIVEIPGIL 672
            .:.|.::|.|.:...::|..:|||  .:|:.|:||||...|:|.|::|...:||:|..|:.|||:
Zfish   140 TSEFTVIMHGEKIRTVEGIVMAADSSRSFSPLEKFGQNFLEKLVGIEMPHSLLERVTFVDTPGII 204

  Fly   673 EVRKQVSRVFPFNDACQWFIDRADIIFLVYDPAKLDVGPETEAILDQLKGREYQTRIILNKADTV 737
            |.|||..|.:||||.|||||||||:||:|:||.|||||.|.|.:..||||||.|.||||||||::
Zfish   205 ENRKQQERGYPFNDVCQWFIDRADLIFVVFDPTKLDVGLELEMLFRQLKGRESQIRIILNKADSL 269

  Fly   738 KPEELLRVQGALIWNISPLMSSAQPPLMYTTSLWTHPYQDGAPARLLLAQERAFLRDLRTAIDKR 802
            ..::|:||.|||.|:::||::..:||.:|.:|.|.:.|.......|...:|.:.|.||...|:.|
Zfish   270 ATQDLMRVYGALFWSLAPLINVTEPPRVYVSSFWPYDYAPDTSRELFKREEISLLEDLNQVIENR 334

  Fly   803 IEHKIASARRFAVRVRNHAKMVDCYLNTFNNHKTLFGNKKRIADDIIDHPQNYHIYEGLSTLTNI 867
            :|:|||..|:..:|||.||.:||.|:.||....:.|.:.:.:..:|:|.|..::|::.:...||:
Zfish   335 LENKIAFIRQHGIRVRIHALLVDRYVQTFKEKMSFFSDPELVFKEIVDDPDKFYIFKSILAKTNV 399

  Fly   868 SRYDLPDPEVYRDFFRLNPLYEFKKLRDTCTYFRGCPITKLDLAIAYELPELAGKYKKMSEAALA 932
            |::|||:.:.|||||.:||:..||:|...|:|..||.:.|::.||.:|||.|.|........||:
Zfish   400 SKFDLPNRDAYRDFFGINPISSFKQLSAQCSYIGGCLLEKIERAITHELPSLLGSINSGKNPALS 464

  Fly   933 AIEA 936
            :.||
Zfish   465 SCEA 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9297NP_001262553.1 TSP3 repeat_long 167..205 CDD:275366
EHD_N 539..569 CDD:293485 11/41 (27%)
EHD 574..813 CDD:206740 117/240 (49%)
srlNP_001070999.1 EHD_N 56..83 CDD:293485 9/26 (35%)
EHD 104..345 CDD:206740 117/240 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581342
Domainoid 1 1.000 170 1.000 Domainoid score I3737
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D377342at2759
OrthoFinder 1 1.000 - - FOG0006934
OrthoInspector 1 1.000 - - otm26524
orthoMCL 1 0.900 - - OOG6_109022
Panther 1 1.100 - - LDO PTHR11216
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5026
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.850

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