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Protein Alignment CG9297 and Ehd1

DIOPT Version :9

Sequence 1:	NP_001262553.1	Gene:	CG9297 / 41688	FlyBaseID:	FBgn0038181	Length:	952	Species:	Drosophila melanogaster
Sequence 2:	NP_001011939.1	Gene:	Ehd1 / 293692	RGDID:	1309017	Length:	534	Species:	Rattus norvegicus

Alignment Length:	418	Identity:	110/418 - (26%)
Similarity:	203/418 - (48%)	Gaps:	32/418 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly   522 NAREKATDNVAEIILRDIKRIYENAVKPLETLYKYRDLSNRHFSDPEIFSKPLILFMGPWSGGKS 586
            :||.|....:.:.:...::::|...:.|||..|::.:..:....|.:..:||::|.:|.:|.||:
  Rat     8 DARRKKEPELFQTVAEGLRQLYAQKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKT 72

  Fly   587 SILNYLTDNEYTPNSLRTGAEPSPAYFNILMWGNETEVLDGTQLAAD--YTFAGLQKFGQGLEER 649
            :.:.:|.:.::.  .:|.|.||:...|..:|.|....|:.|..|..|  ..|..|..||.....|
  Rat    73 TFIRHLIEQDFP--GMRIGPEPTTDSFIAVMHGPTEGVVPGNALVVDPRRPFRKLNAFGNAFLNR 135

  Fly   650 LRGLKMKSKILEKVNIVEIPGILEVRKQ-VSRVFPFNDACQWFIDRADIIFLVYDPAKLDVGPET 713
            ....::.:.:|:.::|::.||||...|| :||.:.|....:||.:|.|.|.|::|..|||:..|.
  Rat   136 FMCAQLPNPVLDSISIIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEF 200

  Fly   714 EAILDQLKGREYQTRIILNKADTVKPEELLRVQGALIWNISPLMSSAQPPLMYTTSLWTHPYQDG 778
            ..::..||..|.:.|::|||||.::.::|:||.|||:|::..::::.:...:|..|.|:||....
  Rat   201 SEVIKALKNHEDKIRVVLNKADQIETQQLMRVYGALMWSLGKIINTPEVVRVYIGSFWSHPLLIP 265

  Fly   779 APARLLLAQERAFLRDL----RTAIDKRIEHKIASARRFAVRVRNHAKMVDCYLNTFNNHKTLFG 839
            ...:|..|:|:...:|:    |.|..:::...|..||...|    ||.::........|   :||
  Rat   266 DNRKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKRARLAKV----HAYIISSLKKEMPN---VFG 323

  Fly   840 ---NKKRIADDIIDHPQNYHIYEGLSTLTNISRYDLPDPEVYRDFFRLNPLYEFK----KLRDTC 897
               .||.:.:::.:      ||:.:.....||..|.|.....::..:.....:|:    ||.||.
  Rat   324 KESKKKELVNNLGE------IYQKIEREHQISSGDFPSLRKMQELLQTQDFSKFQALKPKLLDTV 382

  Fly   898 TYFRGCPITKLDLAIAYE---LPELAGK 922
            .......|.:|.:.:..|   :|..|.|
  Rat   383 DDMLANDIARLMVMVRQEESLMPSQAVK 410

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.