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Protein Alignment CG9297 and Ehd3

DIOPT Version :9

Sequence 1:	NP_001262553.1	Gene:	CG9297 / 41688	FlyBaseID:	FBgn0038181	Length:	952	Species:	Drosophila melanogaster
Sequence 2:	NP_620245.2	Gene:	Ehd3 / 192249	RGDID:	621762	Length:	535	Species:	Rattus norvegicus

Alignment Length:	406	Identity:	105/406 - (25%)
Similarity:	203/406 - (50%)	Gaps:	32/406 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly   524 REKATDNVAEIILRDIKRIYENAVKPLETLYKYRDLSNRHFSDPEIFSKPLILFMGPWSGGKSSI 588
            |.|....|.:.:...:|::|:..:.|||..|::.:..:....|.:..:||::|.:|.:|.||::.
  Rat    10 RRKKDPEVFQTVSEGLKKLYKTKLLPLEEYYRFHEFHSPALEDADFDNKPMVLLVGQYSTGKTTF 74

  Fly   589 LNYLTDNEYTPNSLRTGAEPSPAYFNILMWGNETEVLDGTQLAAD--YTFAGLQKFGQGLEERLR 651
            :.||.:.::.  .:|.|.||:...|..:|.|:...::.|..|..|  ..|..|..||.....|..
  Rat    75 IRYLLEQDFP--GMRIGPEPTTDSFIAVMQGDVEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFV 137

  Fly   652 GLKMKSKILEKVNIVEIPGILEVRKQ-VSRVFPFNDACQWFIDRADIIFLVYDPAKLDVGPETEA 715
            ..::.:.:||.:::::.||||...|| :||.:.|....:||.:|.|.|.|::|..|||:..|...
  Rat   138 CAQLPNAVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSE 202

  Fly   716 ILDQLKGREYQTRIILNKADTVKPEELLRVQGALIWNISPLMSSAQPPLMYTTSLWTHPYQDGAP 780
            ::..||..|.:.|::|||||.::.::|:||.|||:|::..::::.:...:|..|.|:||......
  Rat   203 VIKALKNHEDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDN 267

  Fly   781 ARLLLAQERAFLRDL----RTAIDKRIEHKIASARRFAVRVRNHAKMVDCYLNTFNNHKTLFG-- 839
            .:|..|:|:...:|:    |.|..:::...|..||...|    ||.::.   :......::||
  Rat   268 RKLFEAEEQDLFKDIQSLPRNAALRKLNDLIKRARLAKV----HAYIIS---SLKKEMPSVFGKD 325

  Fly   840 -NKKRIADDIIDHPQNYHIYEGLSTLTNISRYDLPDPEVYRDFFRLNPLYEFKKLRDTCTYFRGC 903
             .||.:.:::.:      ||..:.....||..|.|:.:..:|..:.....:|:.|:...
  Rat   326 TKKKELVNNLAE------IYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKL------ 378

  Fly   904 PITKLDLAIAYELPEL 919
             :..:|..:|:::.:|
  Rat   379 -LEVVDDMLAHDIAQL 393

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.