DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht5 and Chia

DIOPT Version :9

Sequence 1:NP_650314.1 Gene:Cht5 / 41687 FlyBaseID:FBgn0038180 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_997469.1 Gene:Chia / 113901 RGDID:1303058 Length:473 Species:Rattus norvegicus


Alignment Length:573 Identity:185/573 - (32%)
Similarity:259/573 - (45%) Gaps:146/573 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 ASRIVCYFSNWAVYRTGIGRYGLEDVPADLCTHIIYSFIGVNDK-----SWDVLVIDPELDVDQG 85
            |..:||||:|||.||.|:|.:..:|:...||||:||:|.|:.:.     .|:.:.:         
  Rat    21 AYNLVCYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNNQITTIEWNDVTL--------- 76

  Fly    86 GFSKFTQLKKSNPNVKLEIAVGGWAEGGSKYSQMVAVRDRRQSFIRSVVRFMKQYNFDGFDLDWE 150
             :..|..||..|..:|..:|:|||..|.:.::.||:....||:||.||::|::||.|||.|||||
  Rat    77 -YKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWE 140

  Fly   151 YPGATDRGGNYGDKDKFLYFVEELRRAFDREG-----RGWEITMAVPVAKFRLNEGYHVPELCEA 210
            |||:  ||....||..|...|:|||.||::|.     ....:|.||......:..||.:|||.:.
  Rat   141 YPGS--RGSPPQDKHLFTVLVKELREAFEQEAIESNRPRLMVTAAVAAGISNIQAGYEIPELSQY 203

  Fly   211 LDAIHAMTYDLRGNWAGFADVHSPLYKRKHDQYAYEKLNVNDGLALWEEMGCPANKLVVGVPFYG 275
            ||.||.|||||.|:|.|:...:|||||...:..:...|||:..:..|::.|.||.||:||.|.||
  Rat   204 LDFIHVMTYDLHGSWDGYTGENSPLYKLPTETGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPEYG 268

  Fly   276 RTFTLSNSNKNYNMGTYINKEAGGGAPGPYTNASGFLAYYEICTEVMDKSKGWTVEWDDAGMVPY 340
            .|:.|||.: :..:|.   ..:|.|..||||..:||.|||||||.:.:   |.|.:||....|||
  Rat   269 HTYILSNPS-DTGIGA---PTSGNGPAGPYTRQAGFWAYYEICTFLRN---GATQDWDAPQEVPY 326

  Fly   341 TYKDTQWVGYENEASIQIKMDFIKQRGYAGAMTWAIDMDDFHG-MCGRKNGLTQILYDNMKNYRV 404
            .||..:||||:|..|..:|..::||..:.|||.||||:|||.| .|                   
  Rat   327 AYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLDDFTGSFC------------------- 372

  Fly   405 PEPTRQTTPRPEWAKPPATPPNPDEGAVVAPTTSTTKRPKPKPKPTSSPLSPTSAPGPVPTVGSS 469
                                   |:|..  |.|||..:..                 .:||.|.:
  Rat   373 -----------------------DQGKF--PLTSTLNKAL-----------------DIPTAGCT 395

  Fly   470 TPKPTTKKPKKPKKTTTTTTTTPAPEKS--------------TEEPEEVVYPVDPVEPTDPEQPM 520
            .|    ..|.:|       .|||....|              .....:.:|||            
  Rat   396 AP----DLPSEP-------VTTPPGSGSGGGSSGGGSEGSGFCAGKADGLYPV------------ 437

  Fly   521 GPQFDPNEIDCTNRDFVPHPNCRKYFRCVHGKPVEFECKEGTAFHTVLNVCDW 573
                    .|..|          .::.|::|...:..|:.|..|.|..|.|:|
  Rat   438 --------ADDRN----------AFWHCINGITYQQHCQAGLVFDTSCNCCNW 472

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Cht5NP_650314.1 Glyco_18 28..379 CDD:214753 149/360 (41%)
GH18_chitolectin_chitotriosidase 29..397 CDD:119351 154/378 (41%)
Trypan_PARP 367..469 CDD:114603 21/102 (21%)
CBM_14 531..578 CDD:279884 10/43 (23%)
ChiaNP_997469.1 GH18_chitolectin_chitotriosidase 24..387 CDD:119351 160/425 (38%)
Glyco_18 24..365 CDD:214753 149/359 (42%)