DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ubc87F and ube2d1b

DIOPT Version :9

Sequence 1:NP_650309.1 Gene:Ubc87F / 41682 FlyBaseID:FBgn0267383 Length:168 Species:Drosophila melanogaster
Sequence 2:NP_955958.1 Gene:ube2d1b / 324015 ZFINID:ZDB-GENE-030131-2735 Length:147 Species:Danio rerio


Alignment Length:152 Identity:58/152 - (38%)
Similarity:83/152 - (54%) Gaps:18/152 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LNRQLSELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLYEGGFFKAHLIFPKEYPLRPPKMKF 74
            :.::|.:|||.|....|||.|.| |:|.|:..|:||.|:.|:||.|...:.||.:||.:|||:.|
Zfish     6 IQKELQDLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAF 69

  Fly    75 ITEIWHPNIDKAGDVCISILHEPGDDKWGYEKAEERWLPVHTVETILLSVISMLTDPNDESAANV 139
            .|:|:||||:..|.:|:.||             ..:|.|..||..:|||:.|:|.|||.:.....
Zfish    70 TTKIYHPNINSNGSICLDIL-------------RSQWSPALTVSKVLLSICSLLCDPNPDDPLVP 121

  Fly   140 DAAKEYRENYAEFKRKVTRCVR 161
            |.|..|:.:    |.|..|..|
Zfish   122 DIAHIYKSD----KEKYNRLAR 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubc87FNP_650309.1 COG5078 1..163 CDD:227410 58/152 (38%)
UQ_con 10..160 CDD:278603 57/149 (38%)
ube2d1bNP_955958.1 UBCc 1..146 CDD:412187 58/152 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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