DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and Rpe65

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:XP_038959207.1 Gene:Rpe65 / 89826 RGDID:621396 Length:562 Species:Rattus norvegicus


Alignment Length:589 Identity:201/589 - (34%)
Similarity:292/589 - (49%) Gaps:75/589 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHRFAIRNGRVTYQNRFVD 116
            |:..|:..|.:|.||.|:.|||||.|||.::||...|.||||..||||:|..:.|.|||..||:.
  Rat    21 ELSTPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYYRRFIR 85

  Fly   117 TETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIFRPDSGTDNSMISIYPFGDQYYTFTETP 181
            |:...:..:.:|||:|||||.|.||||.:||.||.:.||....|||::::|||.|:.||..|||.
  Rat    86 TDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEITDNALVNIYPVGEDYYACTETN 150

  Fly   182 FMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTVYNLGTTMTRS-GPAYTILSFP----H 241
            |:.:|||.||.|..::...::|.|...|:|||:...|||||:|....:: ..||.|:..|    .
  Rat   151 FITKINPETLETIKQVDLCNYVSVNGATAHPHIESDGTVYNIGNCFGKNFTVAYNIIKIPPLKAD 215

  Fly   242 GEQMFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKA-QLGGQNLSACLK 305
            .|.....:.||...||..:..|.|:|:||||.:|.|.||.|:.::|.:::.: .|.|.|...|.:
  Rat   216 KEDPINKSEVVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFE 280

  Fly   306 WFEDRPTLFHLIDRVSGKLVQT-YESEAFFYLHIINCFERDGHVVVDICSYRNPEMI-NCMYLEA 368
            ..|......|:.|:...|.... |.:..|...|.||.:|.:|.::||:|.::..|.: |.:||  
  Rat   281 SNESMGVWLHVADKKRRKYFNNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYL-- 343

  Fly   369 IANMQTN-----PNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSRTMKHSV 428
             ||::.|     .|.....:....|:|||| ||..|... |.||               |:.|:.
  Rat   344 -ANLRENWEEVKRNAMKAPQPEVRRYVLPL-TIDKADTG-RNLV---------------TLPHTT 390

  Fly   429 SQ---YADITYM---------PTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEGSQAEAFQG 481
            :.   .:|.|..         |..||            ..|.:...|:::.|..           
  Rat   391 ATAILCSDETIWLEPEVLFSGPRQGK------------ISREKLRRESMIYLKI----------- 432

  Fly   482 TNGIQLRPEMLCDWGCETPRIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEE 546
               :.....:.|....|.|:|.|::..||.|.|.|.:.  ::...|..|.|::|..|....|.|.
  Rat   433 ---LNFPVPVFCLKAFEFPQINYQKCGGKPYTYAYGLG--LNHFVPDKLCKLNVKTKEIWMWQEP 492

  Fly   547 NVYPSEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCDFHTNGPVPKCL 611
            :.||||||||..||...|||||:|:.:|..|...:...|:||.||.::|:.|.:..||  :|...
  Rat   493 DSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETN--IPVTF 555

  Fly   612 HGWF 615
            ||.|
  Rat   556 HGLF 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 201/589 (34%)
Rpe65XP_038959207.1 RPE65 20..559 CDD:397263 200/587 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341452
Domainoid 1 1.000 333 1.000 Domainoid score I1097
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 333 1.000 Inparanoid score I2331
OMA 1 1.010 - - QHG59724
OrthoDB 1 1.010 - - D342267at33208
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm44945
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10543
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X319
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1111.010

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