DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and bco2b

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:NP_001035402.1 Gene:bco2b / 678554 ZFINID:ZDB-GENE-060421-7448 Length:555 Species:Danio rerio


Alignment Length:618 Identity:202/618 - (32%)
Similarity:302/618 - (48%) Gaps:124/618 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PQAERLDGNGRLYPNCSSDVWLRSCEREIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFG 89
            |..|:|        .||:|        |..:||....:|::|.||.|:.||||||.:::|..:|.
Zfish    33 PSIEKL--------ICSAD--------ETPEPITTTITGNVPSWIKGNFLRNGPGKFEIGRSSFN 81

  Fly    90 HLFDCSALLHRFAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIF 154
            |.||..||||:|.|.:|:|||.:||:::::.::|....||:|:||||.|:||||.:.|.||.:.|
Zfish    82 HWFDGMALLHQFHIEDGKVTYMSRFLNSDSYKENLEHNRIIVSEFGTVAMPDPCKNFFQRFLSRF 146

  Fly   155 RPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGT 219
            .....:||:.:|...:...||..|||.|||:|:|.||.|:.::..:.|:.|...|:||||...||
Zfish   147 ELPKLSDNANVSFVQYKGDYYVSTETNFMHKIDPETLETKEKVDWSKFIAVNGATAHPHVDSDGT 211

  Fly   220 VYNLGTTMTRSGPAYTILSFPHGEQ----MFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVE 280
            .||:|.:.|..|..|.|:..|..::    ..|.|.||.::|...|..|.|.|:|.::::|.|.:|
Zfish   212 TYNMGNSYTVKGAFYNIIMVPPNKENPNDTLEGASVVCSIPSEDKSKPSYYHSFAMSENYVVFIE 276

  Fly   281 QPLSVSLTEYIKAQLGGQNLSACLKWFEDRPTLFHLIDRVSGKL-VQTYESEAFFYLHIINCFER 344
            ||:.:.|.:.:..:|.|:.::..:.|...|.|:||:|::.:||| :..|.::.....|.|||:|.
Zfish   277 QPIKMDLLKIVTGKLRGKGINEGVYWDPKRNTVFHVINKRTGKLSLVKYYTKPLSTFHQINCYED 341

  Fly   345 DGHVVVDICSYRNPEMINCMYLEAIANMQTNPN-----YATLFRGRPLRFVLPLGTIPPASIAKR 404
            :|.:::|:||..:.:.|| .|:  |.|::.:.:     |.||.|..|.||||||           
Zfish   342 NGFLIMDMCSSDDGQAIN-NYV--IQNLKKSGSALDEVYNTLCRVFPRRFVLPL----------- 392

  Fly   405 GLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLV 469
                          .|.....|                    ||                  ||:
Zfish   393 --------------NVDSDTPH--------------------GE------------------NLI 405

  Fly   470 TMEGSQAEAFQGTNGIQLRPEMLCDW------------GCETPRIYYERYMGKNYRYFYA----- 517
            |...|.|.|.:..|.     ::.|.:            |.|.|.|.|.......|||||.     
Zfish   406 TCFNSTATAIKTDNN-----KVFCTYEDLHGEDLHEYGGLEFPHINYSMCNSHPYRYFYGCGFRH 465

  Fly   518 ISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYPSEPIFVPSPDPKSEDDGVILASMVLGGLNDRY 582
            :..|       :|||:|:..|....|....::||||:||.||....||||||| |:|:....|:.
Zfish   466 LVGD-------SLIKMDLQGKQIKVWKHAGMFPSEPVFVSSPGAVEEDDGVIL-SVVITPNQDKS 522

  Fly   583 VGLIVLCAKTMTELGRCDFHTNGPVPKCLHGWF 615
            ..|:||.|||..||||.:...|  :|...||.|
Zfish   523 TFLLVLDAKTFEELGRAEVPKN--IPYGFHGTF 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 196/591 (33%)
bco2bNP_001035402.1 RPE65 55..555 CDD:281102 193/580 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581442
Domainoid 1 1.000 353 1.000 Domainoid score I958
eggNOG 1 0.900 - - E1_COG3670
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12912
Inparanoid 1 1.050 357 1.000 Inparanoid score I2188
OMA 1 1.010 - - QHG59724
OrthoDB 1 1.010 - - D342267at33208
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm24986
orthoMCL 1 0.900 - - OOG6_100941
Panther 1 1.100 - - O PTHR10543
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.770

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