DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and bco2

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:XP_031760855.1 Gene:bco2 / 448408 XenbaseID:XB-GENE-5747659 Length:567 Species:Xenopus tropicalis


Alignment Length:585 Identity:203/585 - (34%)
Similarity:294/585 - (50%) Gaps:97/585 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHRFAIRNGRVTYQNRFVD 116
            |...|::....|.||.||.|||||||||.::.||..:.|.||..||:|:|.|:||.|||.::|::
 Frog    57 ETPQPVQAAVLGTIPAWINGSLLRNGPGQFEFGDDKYNHWFDGMALMHQFKIKNGSVTYMSKFLE 121

  Fly   117 TETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIFRPDSGTDNSMISIYPFGDQYYTFTETP 181
            ::....|:|..||||:||||.|..|||.|::|||.:.|:.|| |||..::...:...||..|||.
 Frog   122 SDVYNVNKSKNRIVVSEFGTLASSDPCKSLYDRFMSKFKIDS-TDNCSVNYVLYKGDYYVSTETN 185

  Fly   182 FMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFP----HG 242
            ||.:::|.||:|..::..|.|:.|...|:|||..|.||.||:|.:..:.|..|.|:..|    ..
 Frog   186 FMRKVDPETLSTLEKVDWTKFIAVNGATAHPHYDPDGTAYNMGNSYGKQGTRYNIIKVPVQKSGT 250

  Fly   243 EQMFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNLSACLKWF 307
            |:..|.|.|:.::..:.|..|.|.|:||:|::|.:.:|.||.::|.:.:..|:.|:..|..:.|.
 Frog   251 EENLEGAQVICSILPQNKGKPSYYHSFGMTENYVIFIELPLKLNLLKILINQIKGKAFSDIMSWE 315

  Fly   308 EDRPTLFHLIDRVSGK-LVQTYESEAFFYLHIINCFERDGHVVVDICSYRNPEMINCMYLEAI-- 369
            .|.|||||::::.:|: ...|:.::.|...|.||.:|....:|:|:||......||...|:.:  
 Frog   316 PDLPTLFHVVNKHTGEPHPVTFCAQPFMSFHQINAYEDQDCIVLDLCSMDGGGAINMFSLQNLRK 380

  Fly   370 ANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADI 434
            :.......|..:.:..|.||||||.                                     || 
 Frog   381 SGQALTEIYQKVPKSYPHRFVLPLN-------------------------------------AD- 407

  Fly   435 TYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNG-IQLRPEMLCD---- 494
                ||.||.|             :|          :..|.|.|.:..:| :....|.|.|    
 Frog   408 ----TNSKQET-------------KY----------LNYSSATAVRKADGKVWCTHEKLLDDTLK 445

  Fly   495 WGCETPRIYYERYMGKNYRYFYA-----ISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYPSEPI 554
            :|.|.|:|.|.:|..|.|||:||     :..|       :|:|||:..|....|.||..||||||
 Frog   446 YGIEFPQINYSKYNTKKYRYYYACGFQHLIGD-------SLVKVDIETKQTKVWKEEGFYPSEPI 503

  Fly   555 FVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCDFHTNGPV--PKCLHGWFAP 617
            |||.||...||:|||| |.||....::.:.|:||.||...|:||.:.    ||  |...||.|.|
 Frog   504 FVPYPDSAEEDNGVIL-SAVLTPHQEKNIFLLVLDAKDFVEIGRAEV----PVKMPYGFHGIFLP 563

  Fly   618  617
             Frog   564  563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 202/583 (35%)
bco2XP_031760855.1 RPE65 57..563 CDD:397263 202/583 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 339 1.000 Domainoid score I1100
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H12912
Inparanoid 1 1.050 339 1.000 Inparanoid score I2317
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D342267at33208
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm48000
Panther 1 1.100 - - O PTHR10543
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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