DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and Rpe65

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:XP_006501228.1 Gene:Rpe65 / 19892 MGIID:98001 Length:534 Species:Mus musculus


Alignment Length:576 Identity:197/576 - (34%)
Similarity:286/576 - (49%) Gaps:77/576 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHRFAIRNGRVTYQNRFVD 116
            |:..|:..|.:|.||.|:.|||||.|||.::||...|.||||..||||:|..:.|.|||..||:.
Mouse    21 ELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIR 85

  Fly   117 TETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIFRPDSGTDNSMISIYPFGDQYYTFTETP 181
            |:...:..:.:|||:|||||.|.||||.:||.||.:.|:....|||::::|||.|:.||..|||.
Mouse    86 TDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFKGVEVTDNALVNIYPVGEDYYACTETN 150

  Fly   182 FMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTVYNLGTTMTRS-GPAYTILSFP----H 241
            |:.:|||.||.|..::...:::.|...|:|||:...|||||:|....:: ..||.|:..|    .
Mouse   151 FITKINPETLETIKQVDLCNYISVNGATAHPHIESDGTVYNIGNCFGKNFTVAYNIIKIPPLKAD 215

  Fly   242 GEQMFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKA-QLGGQNLSACLK 305
            .|.....:.||...||..:..|.|:|:||||.:|.|.||.|:.::|.:::.: .|.|.|...|.:
Mouse   216 KEDPINKSEVVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFE 280

  Fly   306 WFEDRPTLFHLIDRVSGKLVQT-YESEAFFYLHIINCFERDGHVVVDICSYRNPEMI-NCMYLEA 368
            ..|......|:.|:...|.... |.:..|...|.||.:|.:|.::||:|.::..|.: |.:||  
Mouse   281 SNESMGVWLHVADKKRRKYFNNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYL-- 343

  Fly   369 IANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYAD 433
             ||::.|                       ....||..:|        |||      ..|.:|. 
Mouse   344 -ANLREN-----------------------WEEVKRNAMK--------APQ------PEVRRYV- 369

  Fly   434 ITYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEGSQAEA-FQGTNGIQLRPEMLCD--- 494
               :|....:...|.                  ||||:..:.|.| .:....|.|.||:|..   
Mouse   370 ---LPLTIDKVDTGR------------------NLVTLPHTTATATLRSDETIWLEPEVLFSGPR 413

  Fly   495 WGCETPRIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYPSEPIFVPSP 559
            ...|.|:|.|:::.||.|.|.|.:..: ..|....|.|::|..|....|.|.:.||||||||..|
Mouse   414 QAFEFPQINYQKFGGKPYTYAYGLGLN-HFVPDKQLCKMNVKTKEIWMWQEPDSYPSEPIFVSQP 477

  Fly   560 DPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCDFHTNGPVPKCLHGWF 615
            |...|||||:|:.:|..|...:...|:||.||.::|:.|.:..||  :|...||.|
Mouse   478 DALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETN--IPVTFHGLF 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 197/576 (34%)
Rpe65XP_006501228.1 RPE65 21..531 CDD:376981 196/574 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837711
Domainoid 1 1.000 278 1.000 Domainoid score I1693
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 278 1.000 Inparanoid score I2906
Isobase 1 0.950 - 0.917438 Normalized mean entropy S5013
OMA 1 1.010 - - QHG59724
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm42882
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10543
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5415
SonicParanoid 1 1.000 - - X319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.980

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