DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and F49E10.2

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:NP_508986.1 Gene:F49E10.2 / 180855 WormBaseID:WBGene00018640 Length:842 Species:Caenorhabditis elegans


Alignment Length:639 Identity:123/639 - (19%)
Similarity:213/639 - (33%) Gaps:221/639 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 DVWLRSCEREIVDPIEGHHSGHIPKWICGSLL-----RNGPGSWKVGDMTFGHLFDCSALLHRFA 102
            :.|.....||:..|     |.:||||:.|..|     ..|..|...|: ...|:.|....:..|.
 Worm    29 EAWDGDKYRELYCP-----SKNIPKWLDGYFLCQLSASYGNSSAPEGE-KLNHMIDAIGAVGSFH 87

  Fly   103 IRNGRVTYQNRFVDTETLRKNRSAQRIVVTEF-----GTAAVP-----DPCHSIFDRFAAI-FRP 156
            :.||:|.:..::.         .|:...:.||     ..|:||     |...:...|:..: ..|
 Worm    88 VSNGQVVFSAQYY---------PARPYKIWEFYDRNMSKASVPWAGWSDYNLTAMSRWEQVPANP 143

  Fly   157 DSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICT------------TDFVGVVNHT 209
            ||...:..:..:..|::....||.|:.       :..|..:.|            .|......||
 Worm   144 DSARFHPNLDFWKVGNRIVAGTEAPYW-------VGYEFDVRTLQKFKLFPFKEENDIFSTPRHT 201

  Fly   210 SHPHVL-------PSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAHVVATLPCR--------- 258
            ..|..:       ..||::.          :::.::|.. ::.|:....|.|...|         
 Worm   202 MIPISMAIHERNDADGTIWG----------SFSAMNFEE-QRFFQGIFTVDTNGVRRVVGLYDYG 255

  Fly   259 -W---------------KLHPGYMHTFGLTDHYFVI------------VEQPLSVSLTEYIKAQL 295
             |               .|.|||:|:...|:::.::            .|.||:...:...|..|
 Worm   256 VWDTNACGSNDEYIGDKTLLPGYIHSITSTENFIILPITSLLINPCKFKEPPLNNVRSAIQKGGL 320

  Fly   296 GGQNLSACLKWFEDRPTLFHLIDRVSGKLVQTYESEAF---FYLHIINCFER-DGHVVVDICSYR 356
            .|      :.:::..|..|.:.::.:.:...:...|.|   |..|.:|.||. ||:.|.|:..|.
 Worm   321 WG------MDFYDMVPMRFLIFNKKTLEFTTSKPLEVFPSMFVTHQLNAFEADDGNFVADMVVYD 379

  Fly   357 NPE-MINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQV 420
            :.: .:...|.:.:.. |..|:.|     |.|||.|                             
 Worm   380 SHDPYVKYFYTDFLTK-QLYPSTA-----RVLRFTL----------------------------- 409

  Fly   421 SRTMKHSVSQYADITYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGI 485
                                             |:|:.|.....||...|:              
 Worm   410 ---------------------------------DSKKQRVMYNYLVPQETI-------------- 427

  Fly   486 QLRPEMLCDWGCETPRIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDV----WNKSCLTWCEE 546
                      ..:.|: :...|..|.|::.|.:.....:.|  ::||::|    .|::.....|.
 Worm   428 ----------AADFPQ-FNHNYEQKPYQWGYLVQHPFASGN--SIIKINVDEPAGNRNLEFRAEP 479

  Fly   547 NVYPSEPIFVPSPDPKSEDDGVILASMVLGGLN--DRYVGLIVLCAKTMTELGR 598
            .:...||.||..||.|.||:||    :::.||:  :....|||:.|:.|.||||
 Worm   480 TLVLHEPWFVQKPDSKKEDEGV----LIVRGLDTAENKGVLIVIDAEKMVELGR 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 121/630 (19%)
F49E10.2NP_508986.1 RPE65 46..546 CDD:299160 118/617 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10543
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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