DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and bco2l

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:XP_002942801.3 Gene:bco2l / 100487224 XenbaseID:XB-GENE-962365 Length:559 Species:Xenopus tropicalis


Alignment Length:609 Identity:195/609 - (32%)
Similarity:295/609 - (48%) Gaps:94/609 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 QAERLDGNGRLYPNCSSDVWLRSCEREIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGH 90
            :.::|...||....|.:.::  ....|...||.....|.:|.||.||.||||||.::.|:..|.|
 Frog    21 EKKQLSYTGRTNLECIAPLF--QTVEETPQPIPTQIIGTVPSWIKGSFLRNGPGKFEFGEDKFNH 83

  Fly    91 LFDCSALLHRFAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIFR 155
            .||..||:|:|.|.||.|||.:||:::::.:.|.|..||.|:||||.|:||||.|||.||.:.|.
 Frog    84 WFDGMALMHKFTIENGNVTYMSRFLESDSYKTNHSENRIAVSEFGTTAMPDPCKSIFYRFLSRFE 148

  Fly   156 PDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTV 220
            ..:.|||..|:...:.:.||..|||..||::|...|.|:.::..:.:|.|...|:|||..|.||.
 Frog   149 MPNPTDNGSINFMKYQNDYYVSTETNLMHKVNSDLLVTKEKVDWSKYVAVNGATAHPHYDPDGTT 213

  Fly   221 YNLGTTMTRSGPAYTILSF----PHGEQMFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVEQ 281
            ||:|.:..:.|..|.|:..    |..|...:...:|..:|.:..:.|.|.|:||:|::|.:.|||
 Frog   214 YNMGNSYGKQGTHYNIIKIPATGPETEGTLQGVQIVCCIPAKNTMRPSYYHSFGMTENYIIFVEQ 278

  Fly   282 PLSVSLTEYIKAQLGGQNLSACLKWFEDRPTLFHLIDRVSGKL-VQTYESEAFFYLHIINCFERD 345
            |:.:::...:.:.|.|.:::..:.|.....|:||:.::.:|:| ..|:.:..|...|.||.:|..
 Frog   279 PIKINVLRILTSNLSGASIADSITWDPSCDTVFHVANKHTGELHPVTFHALPFGMFHQINAYEDK 343

  Fly   346 GHVVVDICSYRNPEMINCMYLEAI--ANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVK 408
            |.:|.|:||.::.::::...|:.:  |....:..|.:..|..|.|:||||.|             
 Frog   344 GCIVFDLCSLKDGKILSVYQLQNLHKAGQALDQVYNSAARSFPCRYVLPLNT------------- 395

  Fly   409 SFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEG 473
                 ..:.||                                          :.||::|.....
 Frog   396 -----DSNTPQ------------------------------------------DRNLISLSYTTA 413

  Fly   474 SQAEAFQGTNGIQLRPEMLCD------WGCETPRIYYERYMGKNYRYFYA------ISSDVDAVN 526
            :......||  :...||.|.|      .|.|.|.|.|.:|..|.|||||.      |.|      
 Frog   414 TATNRADGT--VWCTPESLYDTTMEEQGGLEFPAINYSKYNTKKYRYFYGCGFQHLIGS------ 470

  Fly   527 PGTLIKVDVWNKSCLTWCEENVYPSEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAK 591
              :|||||:..|....|.||..|||||:||.|||.|.||.|||| |:|:....::...|::|.||
 Frog   471 --SLIKVDIQTKKLKIWQEEGFYPSEPVFVSSPDLKEEDSGVIL-SVVVTPHQEKSTFLLILDAK 532

  Fly   592 TMTELGRCDFHTNGPVPKCLHGWF 615
            |..|:||.:...:  :|...||.|
 Frog   533 TFAEIGRAEVPVH--MPYGFHGIF 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 191/583 (33%)
bco2lXP_002942801.3 RPE65 44..556 CDD:397263 191/584 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 339 1.000 Domainoid score I1100
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H12912
Inparanoid 1 1.050 339 1.000 Inparanoid score I2317
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D342267at33208
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm48000
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X319
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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