DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaB and bco1

DIOPT Version :9

Sequence 1:NP_650307.2 Gene:ninaB / 41678 FlyBaseID:FBgn0002937 Length:620 Species:Drosophila melanogaster
Sequence 2:XP_002938186.1 Gene:bco1 / 100486582 XenbaseID:XB-GENE-978803 Length:533 Species:Xenopus tropicalis


Alignment Length:589 Identity:202/589 - (34%)
Similarity:303/589 - (51%) Gaps:87/589 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 DVWLRSCEREIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHRFAIRNGR 107
            ||......::..:|::....|.||||:.|:|||||||..|||:|.:.|.||..||||.|..:||.
 Frog    12 DVIFSFDRKDCPEPVKAEVRGEIPKWLQGTLLRNGPGIHKVGEMHYNHWFDGLALLHSFTFKNGE 76

  Fly   108 VTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDR---FAAIFRPDSGTDNSMISIYP 169
            |.|:::::.::|...|..|.||||:||||.|.||||.:||.:   :.:...|:. |||.:|:|..
 Frog    77 VHYRSKYLKSDTYNSNMEANRIVVSEFGTMAYPDPCKNIFSKAFTYLSHVVPEF-TDNCLINIIK 140

  Fly   170 FGDQYYTFTETPFMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPA- 233
            .|:.:|..:||.|:.:|||.||.|..::....:|.|...|||||...:|...|:||::...|.. 
 Frog   141 LGEDFYASSETNFIRKINPQTLDTLEKVDYMKYVTVNIATSHPHYDSAGNTLNMGTSIGDKGKTK 205

  Fly   234 YTILSFP-----HGEQ-MFEDAHVVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIK 292
            |.:...|     :|:: :.:.|.||.::|....|.|.|.|:||||::|.:.:||||.:.:.:...
 Frog   206 YILFKIPAKIPDNGKKSLLKHAEVVCSIPSYRLLSPSYYHSFGLTENYVIFIEQPLKLDIVKLAT 270

  Fly   293 AQLGGQNLSACLKWFEDRPTLFHLIDRVSGK-LVQTYESEAFFYLHIINCFERDGHVVVDICSYR 356
            |...|.|.::|:.:..|..|.||:|||.:.| :.:.:.::|....|.||.:|.|.|::.||.:|:
 Frog   271 AYFRGVNWASCITFNGDEKTWFHIIDRRTRKPISKKFYADALVTYHHINAYEEDDHLIFDIIAYK 335

  Fly   357 NPEMINCMYLEAIANMQTNPNYATLFRGRPL--RFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQ 419
            :..:.:..||   ||::.:.:..|.....|:  |||:||                          
 Frog   336 DNGLYDMFYL---ANLKKDFSQETAMTSVPVCKRFVIPL-------------------------- 371

  Fly   420 VSRTMKHSVSQYADITYMPTNGKQATAGEESPKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNG 484
                      ||         .|....|                  ||||.:..:.|:|.:..||
 Frog   372 ----------QY---------DKNVNVG------------------VNLVRIPMTMAKAVKDDNG 399

  Fly   485 -IQLRPEMLCDWGCETPRIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENV 548
             |...||.:|: |.|.|||.|: :.||.|||.||...:...: |..::|.|...|..|:|.|:..
 Frog   400 DIYCEPETMCE-GIELPRINYD-FNGKKYRYVYATHVEWRPI-PTKIVKFDTVTKDMLSWTEDMC 461

  Fly   549 YPSEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCDFHTNGPVPKCLHG 613
            :|:||:||..||.|.|||||||:|:|....| :...|:||.|||..||||...:.|  :...|||
 Frog   462 WPAEPMFVSHPDAKEEDDGVILSSVVSSDPN-KAPFLLVLDAKTFQELGRASVNAN--IHLDLHG 523

  Fly   614 WFAP 617
            .|.|
 Frog   524 LFIP 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaBNP_650307.2 RPE65 52..617 CDD:281102 199/578 (34%)
bco1XP_002938186.1 RPE65 22..527 CDD:376981 199/577 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 339 1.000 Domainoid score I1100
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 339 1.000 Inparanoid score I2317
OMA 1 1.010 - - QHG59724
OrthoDB 1 1.010 - - D342267at33208
OrthoFinder 1 1.000 - - FOG0000856
OrthoInspector 1 1.000 - - otm48000
Panther 1 1.100 - - LDO PTHR10543
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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