DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment f-cup and PIRL4

DIOPT Version :9

Sequence 1:NP_001262544.1 Gene:f-cup / 41677 FlyBaseID:FBgn0028487 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_195272.1 Gene:PIRL4 / 829699 AraportID:AT4G35470 Length:549 Species:Arabidopsis thaliana


Alignment Length:482 Identity:135/482 - (28%)
Similarity:216/482 - (44%) Gaps:83/482 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MNLSNVELG--SFRGAQECDQASAFGGDFDFGHSCFTHY-----GC---PSDMSDKTGRGRSNPS 56
            |.|..::.|  .||..::..:|... .|.:..||.|..:     .|   ||.....:.|....|:
plant    72 MVLQEMKKGYVQFRSKEQIREALKL-LDLESVHSLFDDFIQRASNCIASPSSNGSVSSRPPLPPA 135

  Fly    57 TSRIPRSAQSPRQASVVHSPRTNCAFRPIFHERSTHEDDQVLTQELWKLARKSGTLNLSNKALAR 121
            |:   .:|:|..|:|:..|.|.     |:..:.....||..:|        ||...:|.:...|.
plant   136 TT---TAARSDSQSSLNFSERA-----PVRPKDMVSRDDSFVT--------KSKPSSLYSDGFAA 184

  Fly   122 VPKR------------------------LYDINEADADSKAVNLE-QLTIKEE---DAWWNQVPL 158
            .|:|                        |.:::...| ::.:||: :||.:.|   |:......|
plant   185 PPRRPQILDSTLTTGNDGEKLSLIKLASLIEVSAKKA-TQEINLQNKLTEQLEWLPDSLGKLSSL 248

  Fly   159 NNLDLSSNTLTHISPKIENLQSLTVLTLHDNALVELPPEIGKLEKLVRLNVSHNKLSQLPRAMYS 223
            .:||||.|.:..:...|..|.|||.|.||.|.:.:||..||:|..||.||:..|:||.||.|...
plant   249 TSLDLSENHIVVLPNTIGGLSSLTKLDLHSNRIGQLPESIGELLNLVYLNLGSNQLSSLPSAFSR 313

  Fly   224 LPELRHLNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGIGFLVRLTALLLPYNHIKELPP 288
            |..|..|::|.                       ||:..||..||.||.|..|.:..|.|:|:|.
plant   314 LVRLEELDLSC-----------------------NNLPILPESIGSLVSLKKLDVETNDIEEIPY 355

  Fly   289 DLVNMRSLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQHNDILELPEFEGNEA-LNELHASNNFIK 352
            .:....||.::...:|.|.:|||.:|.:..|:.|.:::|:|.:||....:.| |.||..|.|.::
plant   356 SIGGCSSLIELRADYNKLKALPEAIGKITTLEILSVRYNNIRQLPTTMSSLASLKELDVSFNELE 420

  Fly   353 IIPKAMCSNLPHLKILDLRDN--KITELPDELCLLRNLNRLDVSNNTISVLPVTLSSLAHLISLQ 415
            .:|:::|.....:| |::.:|  .:..||..:..|..|..||:|||.|.|||.:...|..|...:
plant   421 SVPESLCFATTLVK-LNIGNNFADMVSLPRSIGNLEMLEELDISNNQIRVLPDSFKMLTKLRVFR 484

  Fly   416 VEGNPIKTIRRDILQCGTTRILKTLHD 442
            .:.||:....|||.:.|...:::.::|
plant   485 AQENPLHIPPRDIAEKGPQAVVQYMND 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
f-cupNP_001262544.1 leucine-rich repeat 111..140 CDD:275380 6/52 (12%)
LRR_RI 155..>377 CDD:238064 73/224 (33%)
leucine-rich repeat 158..180 CDD:275380 8/21 (38%)
LRR_8 180..235 CDD:290566 26/54 (48%)
leucine-rich repeat 181..203 CDD:275380 11/21 (52%)
leucine-rich repeat 204..226 CDD:275380 11/21 (52%)
LRR_8 225..283 CDD:290566 14/57 (25%)
leucine-rich repeat 227..249 CDD:275380 3/21 (14%)
leucine-rich repeat 250..272 CDD:275380 7/21 (33%)
LRR_8 272..329 CDD:290566 17/56 (30%)
leucine-rich repeat 273..295 CDD:275380 6/21 (29%)
leucine-rich repeat 296..318 CDD:275380 7/21 (33%)
LRR_8 317..375 CDD:290566 17/60 (28%)
leucine-rich repeat 319..340 CDD:275380 6/20 (30%)
leucine-rich repeat 341..364 CDD:275380 7/22 (32%)
leucine-rich repeat 389..410 CDD:275380 10/20 (50%)
leucine-rich repeat 411..430 CDD:275380 6/18 (33%)
leucine-rich repeat 627..650 CDD:275380
leucine-rich repeat 651..669 CDD:275380
leucine-rich repeat 697..719 CDD:275380
LRR_8 719..777 CDD:290566
leucine-rich repeat 720..743 CDD:275380
leucine-rich repeat 744..766 CDD:275380
PIRL4NP_195272.1 LRR 194..>471 CDD:227223 92/301 (31%)
leucine-rich repeat 271..293 CDD:275380 11/21 (52%)
leucine-rich repeat 294..316 CDD:275380 11/21 (52%)
leucine-rich repeat 317..339 CDD:275380 10/44 (23%)
leucine-rich repeat 340..362 CDD:275380 6/21 (29%)
leucine-rich repeat 363..385 CDD:275380 7/21 (33%)
leucine-rich repeat 386..408 CDD:275380 6/21 (29%)
leucine-rich repeat 409..431 CDD:275380 7/21 (33%)
leucine-rich repeat 432..456 CDD:275380 6/24 (25%)
leucine-rich repeat 457..479 CDD:275380 11/21 (52%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.