DRSC/TRiP Functional Genomics Resources

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Protein Alignment f-cup and LRRC40

DIOPT Version :10

Sequence 1:NP_001262544.1 Gene:f-cup / 41677 FlyBaseID:FBgn0028487 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_060238.3 Gene:LRRC40 / 55631 HGNCID:26004 Length:602 Species:Homo sapiens


Alignment Length:704 Identity:227/704 - (32%)
Similarity:347/704 - (49%) Gaps:131/704 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 QELWKLARKSGTLNLSNKALARVPKRLYDINEADADSKAVNLEQLTIKEEDAWWNQVPLNNLDLS 164
            |.|.|.|||||.||||.:.|:.||:.::.|| .|...:|  .:.|:....:.||.|..|..|.:|
Human    29 QGLLKAARKSGQLNLSGRNLSEVPQCVWRIN-VDIPEEA--NQNLSFGATERWWEQTDLTKLIIS 90

  Fly   165 SNTLTHISPKIENLQSLTVLTLHDNALVELPPEIGKLEKLVRLNVSHNKLSQLPRAMYSLPELRH 229
            :|.|..::..:..|.:||||.:|||.|..||..|.:||.|.:||||||||..||..:.:|..|:.
Human    91 NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKC 155

  Fly   230 LNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGIGFLVRLTALLLPYNHIKELPPDLVNMR 294
            |.:.:||...::.....|..||.||..:|::.::|.....|..|..|.|..|.:|.||.::..|:
Human   156 LYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINRMK 220

  Fly   295 SLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQHNDILELPEFEGNEALNELHASNNFIKIIPKAMC 359
            .|:.:|...|.|.::|.::..:..|:.|||:.|.:..||||.....|.|||...|.|:::.....
Human   221 RLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQIEMLEAEHL 285

  Fly   360 SNLPHLKILDLRDNKITELPDELCLLRNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKTI 424
            .:|..:.:|||||||:..:|||:.|||:|.|||:|||.||.||.:|.:| ||..|.:||||::||
Human   286 KHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI 349

  Fly   425 RRDILQCGTTRILKTLHDRAVAKAKEEGGGVDDASTSAGISVTRLRGGQMDDGDIPGNFPDSFHH 489
            ||:|:..||..:||.|.    :|.|::|....:::|...:::                       
Human   350 RREIISKGTQEVLKYLR----SKIKDDGPSQSESATETAMTL----------------------- 387

  Fly   490 QQQQNGFQCPCSYPCQQQQMQQQFCVYEPLRNCQEYDRQTQGRIYEPENYQQQHQNGSLRSLFVQ 554
                                                                             
Human   388 ----------------------------------------------------------------- 387

  Fly   555 QQQQRMEYPYPGYFMYQQQQQQQFSYEQDPS-SRSAVHPRWVYKLRHTRTLAVNLEELTSVPDQV 618
                                         || ||..:|.....|:     |..:.::.|.:||:|
Human   388 -----------------------------PSESRVNIHAIITLKI-----LDYSDKQATLIPDEV 418

  Fly   619 FQIARDEGVHVVDFARNQLSTLPNGLQHMKDLVTELVLSNNVIGYVPQFISQFTRISFLNLSNNL 683
            |...:...|..::|::|||..:|..:..:|::|:::.||.|.:.::...:....:::||:|.||.
Human   419 FDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNF 483

  Fly   684 LNDLPTEFGVLNTLRELNIANNRFPCIPNCVYELQGLEILIASENHIKMLNVSGLQNMRRLSTLD 748
            ||.||.|...|..|:.:|::.|||..:|..:|.:..||.::.|.|.:..::...::.|..|:|||
Human   484 LNSLPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLD 548

  Fly   749 LRNNDIETVPPILGNLTNITHLELVGNPFRQPRHQILMKGTDAIMSYLRDRIPT 802
            |:|||:..:||.|||..|:..|.|.|||||.||..||||||.||:.||||||||
Human   549 LQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
f-cupNP_001262544.1 LRR 98..428 CDD:443914 132/327 (40%)
leucine-rich repeat 111..140 CDD:275380 11/28 (39%)
leucine-rich repeat 158..180 CDD:275380 6/21 (29%)
leucine-rich repeat 181..203 CDD:275380 12/21 (57%)
leucine-rich repeat 204..226 CDD:275380 12/21 (57%)
leucine-rich repeat 227..249 CDD:275380 5/21 (24%)
leucine-rich repeat 250..272 CDD:275380 7/21 (33%)
leucine-rich repeat 273..295 CDD:275380 8/21 (38%)
leucine-rich repeat 296..318 CDD:275380 5/21 (24%)
leucine-rich repeat 319..340 CDD:275380 9/20 (45%)
leucine-rich repeat 341..364 CDD:275380 7/22 (32%)
leucine-rich repeat 389..410 CDD:275380 12/20 (60%)
leucine-rich repeat 411..430 CDD:275380 11/18 (61%)
leucine-rich repeat 627..650 CDD:275380 7/22 (32%)
LRR <629..>778 CDD:443914 52/148 (35%)
leucine-rich repeat 651..669 CDD:275380 4/17 (24%)
leucine-rich repeat 697..719 CDD:275380 7/21 (33%)
leucine-rich repeat 720..743 CDD:275380 5/22 (23%)
leucine-rich repeat 744..766 CDD:275380 13/21 (62%)
LRRC40NP_060238.3 LRR 8 244..265 9/20 (45%)
leucine-rich repeat 245..266 CDD:275380 9/20 (45%)
LRR 9 266..286 6/19 (32%)
leucine-rich repeat 267..290 CDD:275380 7/22 (32%)
LRR 10 290..311 10/20 (50%)
leucine-rich repeat 291..313 CDD:275380 12/21 (57%)
LRR 11 313..335 13/22 (59%)
LRR 12 336..356 11/19 (58%)
LRR 13 400..421 7/25 (28%)
LRR 14 426..447 6/20 (30%)
leucine-rich repeat 447..473 CDD:275380 5/25 (20%)
LRR 15 450..472 4/21 (19%)
LRR 16 473..494 10/20 (50%)
leucine-rich repeat 474..496 CDD:275380 11/21 (52%)
LRR 17 496..517 7/20 (35%)
leucine-rich repeat 497..543 CDD:275380 12/45 (27%)
LRR 18 519..540 4/20 (20%)
LRR 19 543..564 12/20 (60%)
leucine-rich repeat 544..566 CDD:275380 13/21 (62%)
LRR 20 566..586 11/19 (58%)
leucine-rich repeat 41..83 CDD:275380 15/44 (34%)
LRR 76..>346 CDD:443914 107/270 (40%)
LRR 1 83..104 5/20 (25%)
leucine-rich repeat 84..106 CDD:275380 6/21 (29%)
LRR 2 106..127 11/20 (55%)
leucine-rich repeat 107..129 CDD:275380 12/21 (57%)
PLN00113 120..>577 CDD:215061 169/583 (29%)
LRR 3 129..150 11/20 (55%)
leucine-rich repeat 130..152 CDD:275380 12/21 (57%)
LRR 4 152..173 4/20 (20%)
leucine-rich repeat 153..175 CDD:275380 5/21 (24%)
LRR 5 175..196 6/20 (30%)
leucine-rich repeat 176..198 CDD:275380 7/21 (33%)
LRR 6 198..219 7/20 (35%)
leucine-rich repeat 199..221 CDD:275380 8/21 (38%)
LRR 7 221..242 5/20 (25%)
leucine-rich repeat 222..244 CDD:275380 5/21 (24%)

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