DRSC/TRiP Functional Genomics Resources

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Protein Alignment f-cup and lrrc40

DIOPT Version :10

Sequence 1:NP_001262544.1 Gene:f-cup / 41677 FlyBaseID:FBgn0028487 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_001011310.1 Gene:lrrc40 / 496765 XenbaseID:XB-GENE-968689 Length:605 Species:Xenopus tropicalis


Alignment Length:745 Identity:229/745 - (30%)
Similarity:346/745 - (46%) Gaps:141/745 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 SRIPRSAQSPRQASVVHSPRTNCAFRPIFHERSTHEDDQVLTQELWKLARKSGTLNLSNKALARV 122
            ||..|..::|...|...:|:               |.:..:...|.|.|||||.||||.:.|..|
 Frog     2 SRFRRGGKAPDPLSGFRAPK---------------EQEPAVPHGLIKAARKSGQLNLSARGLTDV 51

  Fly   123 PKRLYDINEADADSKAVNLEQLTIKEEDAWWNQVPLNNLDLSSNTLTHISPKIENLQSLTVLTLH 187
            |..::.||   .|:.....:.:.....|.||.|..|..|.|:||.|..:|..|..|.:|.||.:|
 Frog    52 PVSVWRIN---VDTPPEAHQNVDFGGSDRWWEQTDLTKLILASNKLQLLSEDISLLPALVVLDIH 113

  Fly   188 DNALVELPPEIGKLEKLVRLNVSHNKLSQLPRAMYSLPELRHLNISYNEFVELNPDISDLHMLEF 252
            ||.:|.||..|.:|..|.:||:||||:.|||:.:..|..|:.|.:.:|:..||...|..|.:||.
 Frog   114 DNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHLQNLKSLLLQHNQLEELPDSIGHLSILEE 178

  Fly   253 LDGGHNNIQSLPGGIGFLVRLTALLLPYNHIKELPPDLVNMRSLQKIDLMHNDLTSLPEDMGLLR 317
            ||..:|.::|:...:|.|..|....|..|.:..||.::..|::|:::|...|.|.::|..:..:.
 Frog   179 LDVSNNCLRSISSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLKQLDCTSNLLENVPASVAGME 243

  Fly   318 KLDCLYLQHNDILELPEFEGNEALNELHASNNFIKIIPKAMCSNLPHLKILDLRDNKITELPDEL 382
            .|:.|||:.|.:..|||......|.|||..||.|:.:......||..|.:|:||.||:..||:|:
 Frog   244 SLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEI 308

  Fly   383 CLLRNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKTIRRDILQCGTTRILKTLHDRAVAK 447
            .||..|.|||:|||.:..||.||.||.:|.|||:||||::.||||||..||..:||.|       
 Frog   309 SLLNGLERLDLSNNDLGSLPCTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYL------- 366

  Fly   448 AKEEGGGVDDASTSAGISVTRLRGGQMDDGDIPGNFPDSFHHQQQQNGFQCPCSYPCQQQQMQQQ 512
                                                                             
 Frog   367 ----------------------------------------------------------------- 366

  Fly   513 FCVYEPLRNCQEYDRQTQGRIYEPENYQQQHQNGSLRSLFVQQQQQRMEYPYPGYFMYQQQQQQQ 577
                             :||:..|:...|:.:|.:..:         |..|              
 Frog   367 -----------------KGRVQVPDVKTQEDENSTATA---------MTLP-------------- 391

  Fly   578 FSYEQDPSSRSAVHPRWVYKLRHTRTLAVNLEELTSVPDQVFQIARDEGVHVVDFARNQLSTLPN 642
                    |.|.|:...:..|   :||....::.:.:|:.||.......:..|:|::|||:.:|.
 Frog   392 --------SESVVNTHAIVTL---KTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPA 445

  Fly   643 GLQHMKDLVTELVLSNNVIGYVPQFISQFTRISFLNLSNNLLNDLPTEFGVLNTLRELNIANNRF 707
            .:..|||.|.::.|..|.|..:...:....:::.:::.||:|..||:|...:..|:.:.::.|||
 Frog   446 RIVEMKDSVCDVNLGFNKISSISLNLCMLLKLTHIDMRNNVLTSLPSEMEAMTRLQSVILSFNRF 510

  Fly   708 PCIPNCVYELQGLEILIASENHIKMLNVSGLQNMRRLSTLDLRNNDIETVPPILGNLTNITHLEL 772
            ...|:.:|.:..||.::.|.|.|..::.:.|..|.:||||||:|||:..:||.|||..::..|.|
 Frog   511 KHFPDVLYRIPTLETILISSNQIGSIDPTQLIKMTKLSTLDLQNNDLLQIPPALGNCESLRALHL 575

  Fly   773 VGNPFRQPRHQILMKGTDAIMSYLRDRIPT 802
            .|||||.||..||.|||.|::.|||.||||
 Frog   576 EGNPFRNPRAAILAKGTVAVLEYLRSRIPT 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
f-cupNP_001262544.1 LRR 98..428 CDD:443914 130/329 (40%)
leucine-rich repeat 111..140 CDD:275380 10/28 (36%)
leucine-rich repeat 158..180 CDD:275380 9/21 (43%)
leucine-rich repeat 181..203 CDD:275380 11/21 (52%)
leucine-rich repeat 204..226 CDD:275380 11/21 (52%)
leucine-rich repeat 227..249 CDD:275380 7/21 (33%)
leucine-rich repeat 250..272 CDD:275380 8/21 (38%)
leucine-rich repeat 273..295 CDD:275380 6/21 (29%)
leucine-rich repeat 296..318 CDD:275380 5/21 (24%)
leucine-rich repeat 319..340 CDD:275380 8/20 (40%)
leucine-rich repeat 341..364 CDD:275380 9/22 (41%)
leucine-rich repeat 389..410 CDD:275380 12/20 (60%)
leucine-rich repeat 411..430 CDD:275380 13/18 (72%)
leucine-rich repeat 627..650 CDD:275380 8/22 (36%)
LRR <629..>778 CDD:443914 51/148 (34%)
leucine-rich repeat 651..669 CDD:275380 4/17 (24%)
leucine-rich repeat 697..719 CDD:275380 6/21 (29%)
leucine-rich repeat 720..743 CDD:275380 7/22 (32%)
leucine-rich repeat 744..766 CDD:275380 14/21 (67%)
lrrc40NP_001011310.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26 7/38 (18%)
LRR 78..363 CDD:443914 117/284 (41%)
LRR 1 83..104 8/20 (40%)
leucine-rich repeat 84..106 CDD:275380 9/21 (43%)
LRR 2 106..127 10/20 (50%)
leucine-rich repeat 107..129 CDD:275380 11/21 (52%)
LRR 3 129..151 10/21 (48%)
leucine-rich repeat 130..152 CDD:275380 11/21 (52%)
LRR 4 152..173 6/20 (30%)
leucine-rich repeat 153..175 CDD:275380 7/21 (33%)
LRR 5 175..196 7/20 (35%)
leucine-rich repeat 176..198 CDD:275380 8/21 (38%)
LRR 6 198..219 5/20 (25%)
leucine-rich repeat 199..221 CDD:275380 6/21 (29%)
LRR 7 221..242 5/20 (25%)
leucine-rich repeat 222..244 CDD:275380 5/21 (24%)
LRR 8 244..265 8/20 (40%)
leucine-rich repeat 245..266 CDD:275380 8/20 (40%)
LRR 9 266..287 7/20 (35%)
leucine-rich repeat 267..290 CDD:275380 9/22 (41%)
LRR 10 290..311 9/20 (45%)
leucine-rich repeat 291..313 CDD:275380 11/21 (52%)
LRR 11 313..335 12/21 (57%)
leucine-rich repeat 314..336 CDD:275380 13/21 (62%)
LRR 12 336..357 14/20 (70%)
leucine-rich repeat 337..355 CDD:275380 12/17 (71%)
leucine-rich repeat 363..476 CDD:275380 32/235 (14%)
LRR 13 429..450 6/20 (30%)
LRR <430..>582 CDD:443914 52/151 (34%)
LRR 14 453..475 4/21 (19%)
LRR 15 476..497 6/20 (30%)
leucine-rich repeat 477..522 CDD:275380 12/44 (27%)
LRR 16 499..520 6/20 (30%)
leucine-rich repeat 500..513 CDD:275380 4/12 (33%)
LRR 17 522..543 6/20 (30%)
leucine-rich repeat 523..546 CDD:275380 7/22 (32%)
LRR 18 546..567 13/20 (65%)
leucine-rich repeat 547..569 CDD:275380 14/21 (67%)
LRR 19 569..590 11/20 (55%)

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