DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment f-cup and LRRC30

DIOPT Version :9

Sequence 1:NP_001262544.1 Gene:f-cup / 41677 FlyBaseID:FBgn0028487 Length:802 Species:Drosophila melanogaster
Sequence 2:NP_001099051.1 Gene:LRRC30 / 339291 HGNCID:30219 Length:301 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
f-cupNP_001262544.1 leucine-rich repeat 111..140 CDD:275380
LRR_RI 155..>377 CDD:238064
leucine-rich repeat 158..180 CDD:275380
LRR_8 180..235 CDD:290566
leucine-rich repeat 181..203 CDD:275380
leucine-rich repeat 204..226 CDD:275380
LRR_8 225..283 CDD:290566
leucine-rich repeat 227..249 CDD:275380
leucine-rich repeat 250..272 CDD:275380
LRR_8 272..329 CDD:290566
leucine-rich repeat 273..295 CDD:275380
leucine-rich repeat 296..318 CDD:275380
LRR_8 317..375 CDD:290566
leucine-rich repeat 319..340 CDD:275380
leucine-rich repeat 341..364 CDD:275380
leucine-rich repeat 389..410 CDD:275380
leucine-rich repeat 411..430 CDD:275380
leucine-rich repeat 627..650 CDD:275380
leucine-rich repeat 651..669 CDD:275380
leucine-rich repeat 697..719 CDD:275380
LRR_8 719..777 CDD:290566
leucine-rich repeat 720..743 CDD:275380
leucine-rich repeat 744..766 CDD:275380
LRRC30NP_001099051.1 LRR 1 72..93
leucine-rich repeat 73..95 CDD:275380
LRR_8 94..173 CDD:290566
LRR 2 95..116
leucine-rich repeat 96..118 CDD:275380
LRR 3 118..139
leucine-rich repeat 119..141 CDD:275380
LRR_4 141..179 CDD:289563
LRR 4 141..163
leucine-rich repeat 142..164 CDD:275380
LRR 5 164..185
leucine-rich repeat 165..187 CDD:275380
LRR 6 187..208
leucine-rich repeat 188..210 CDD:275380
LRR 7 210..231
leucine-rich repeat 211..229 CDD:275380
LRR 8 233..254
leucine-rich repeat 257..277 CDD:275378
LRR 9 265..287
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.