DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment f-cup and Lrrd1

DIOPT Version :9

Sequence 1:NP_001262544.1 Gene:f-cup / 41677 FlyBaseID:FBgn0028487 Length:802 Species:Drosophila melanogaster
Sequence 2:XP_216085.3 Gene:Lrrd1 / 296836 RGDID:1562785 Length:855 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
f-cupNP_001262544.1 leucine-rich repeat 111..140 CDD:275380
LRR_RI 155..>377 CDD:238064
leucine-rich repeat 158..180 CDD:275380
LRR_8 180..235 CDD:290566
leucine-rich repeat 181..203 CDD:275380
leucine-rich repeat 204..226 CDD:275380
LRR_8 225..283 CDD:290566
leucine-rich repeat 227..249 CDD:275380
leucine-rich repeat 250..272 CDD:275380
LRR_8 272..329 CDD:290566
leucine-rich repeat 273..295 CDD:275380
leucine-rich repeat 296..318 CDD:275380
LRR_8 317..375 CDD:290566
leucine-rich repeat 319..340 CDD:275380
leucine-rich repeat 341..364 CDD:275380
leucine-rich repeat 389..410 CDD:275380
leucine-rich repeat 411..430 CDD:275380
leucine-rich repeat 627..650 CDD:275380
leucine-rich repeat 651..669 CDD:275380
leucine-rich repeat 697..719 CDD:275380
LRR_8 719..777 CDD:290566
leucine-rich repeat 720..743 CDD:275380
leucine-rich repeat 744..766 CDD:275380
Lrrd1XP_216085.3 leucine-rich repeat 162..185 CDD:275380
LRR_8 185..242 CDD:290566
leucine-rich repeat 186..208 CDD:275380
leucine-rich repeat 209..231 CDD:275380
leucine-rich repeat 232..254 CDD:275380
LRR_RI 253..564 CDD:238064
LRR_8 253..311 CDD:290566
leucine-rich repeat 255..277 CDD:275380
leucine-rich repeat 278..300 CDD:275380
LRR_8 299..357 CDD:290566
leucine-rich repeat 301..323 CDD:275380
leucine-rich repeat 324..346 CDD:275380
leucine-rich repeat 347..392 CDD:275380
leucine-rich repeat 439..461 CDD:275380
leucine-rich repeat 463..484 CDD:275380
leucine-rich repeat 487..507 CDD:275380
leucine-rich repeat 508..530 CDD:275380
leucine-rich repeat 531..553 CDD:275380
LRR_RI 537..>728 CDD:238064
LRR_8 553..610 CDD:290566
leucine-rich repeat 554..576 CDD:275380
leucine-rich repeat 577..599 CDD:275380
leucine-rich repeat 600..648 CDD:275380
leucine-rich repeat 649..671 CDD:275380
LRR_8 670..728 CDD:290566
leucine-rich repeat 672..694 CDD:275380
leucine-rich repeat 695..717 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.