DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and GRIK2

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_200863.2 Gene:GRIK2 / 836176 AraportID:AT5G60550 Length:407 Species:Arabidopsis thaliana


Alignment Length:394 Identity:109/394 - (27%)
Similarity:178/394 - (45%) Gaps:54/394 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GAQHKVEEEEPDPVEDEMTVLLANKNFHYDVASDLDDDAFVELKEDTAQADDAGAGVGFYNPDEL 116
            |:.....::.|.|.:|:.          :...||:...|..|.:||..:.:.....   ...:|:
plant    19 GSSGSRNQQSPKPYDDDT----------HSCDSDVTSTARGEEEEDEEEVEQKSRS---KRSEEI 70

  Fly   117 LLDDQPHPQVTWLDDDEIETLDRVTLDMGNMFFNRV---DSQDIIYQQKKKSIKMVGKYIMGDVL 178
            |                     :..||.| :....:   ::.::|..:.:...|.:.:|:....:
plant    71 L---------------------KYRLDNG-LICRHIPVRETNELIRGEDENGDKTINEYVRVCKI 113

  Fly   179 GEGSYGKVKEAMNSENLCRLAVKILTKRKLRRI-----PNGEQNVTREIALLKQLKHRHVVELVD 238
            |.||||||....::.:....|:|...|..|.|:     .....:|.||:.::|.|:|.::|.|::
plant   114 GSGSYGKVVLYRSTLDGQYYAIKAFHKSHLLRLRVAPSETAMSDVLREVMIMKILEHPNIVNLIE 178

  Fly   239 VLYNEEKQKMYLVMEYCVGGLQEMIDYQPDKRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDIKPG 303
            |:.:.|....|:|:|| |.|........|...:....|..|.:.:|.||.|||:..|||.||||.
plant   179 VIDDPETDHFYMVLEY-VDGKWVYDGSGPPGALGEKTARKYLRDIVTGLMYLHAHDVIHGDIKPD 242

  Fly   304 NLLLSLDQTLKISDFGVAEQLDLFA-PDDTCTTGQGSPAFQPPE--IANGHETFAGFKVDIWSSG 365
            |||::...|:||.||.|::   :|. .||......|:|.|..||  :.:| .|::|...|.|:.|
plant   243 NLLVTSSGTVKIGDFSVSQ---VFKDDDDQLRRSPGTPVFTAPECCLVSG-ITYSGRAADTWAVG 303

  Fly   366 VTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAWLYEMDADFANLILGMLQADPSKRLSLQEIR 430
            ||||.:..|||||..|.:....:.|.......|..|..:..|   ||.|:|..|||:|::|:.:.
plant   304 VTLYCMILGQYPFLADTLQDTYDKIVNNPLIIPDGLNPLLRD---LIEGLLCKDPSQRMTLKNVS 365

  Fly   431 HDTW 434
            ...|
plant   366 EHPW 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 92/271 (34%)
STKc_LKB1 178..435 CDD:271021 91/265 (34%)
GRIK2NP_200863.2 STKc_LKB1_CaMKK 113..370 CDD:270910 91/265 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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