DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and prkaa2

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_700831.4 Gene:prkaa2 / 572074 ZFINID:ZDB-GENE-081120-5 Length:553 Species:Danio rerio


Alignment Length:381 Identity:114/381 - (29%)
Similarity:191/381 - (50%) Gaps:54/381 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 QQKKKSIKMVGKYIMGDVLGEGSYGKVKEAMNSENLCRLAVKILTKRKLRRIPNGEQNVTREIAL 224
            :||.:....:|.||:||.||.|::||||...:.....::|||||.::|:|.: :....:.|||..
Zfish     4 KQKHEGRVKIGHYILGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSL-DVVGKIKREIQN 67

  Fly   225 LKQLKHRHVVELVDVLYNEEKQKMYLVMEYCVGGLQEMIDY-QPDKRMPLFQAHGYFKQLVDGLE 288
            ||..:|.|:::|..|:  ......::||||..||  |:.|| ....|:...:|...|:|::..::
Zfish    68 LKLFRHPHIIKLYQVI--STPTDFFMVMEYVSGG--ELFDYICKHGRVEDAEARRLFQQIISAVD 128

  Fly   289 YLHSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANGHET 353
            |.|...|:|:|:||.|:||..:...||:|||::   ::.:..:...|..|||.:..||:.:| ..
Zfish   129 YCHRHMVVHRDLKPENVLLDGNMNAKIADFGLS---NMMSDGEFLRTSCGSPNYAAPEVISG-RL 189

  Fly   354 FAGFKVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAWLYEMDADFANLILGMLQA 418
            :||.:|||||.||.||.|..|..||:.:::..|.:.|..|.:..|.:|   :...|:|::.|||.
Zfish   190 YAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYL---NRSVASLLMLMLQV 251

  Fly   419 DPSKRLSLQEIRHDTWFRSAPVKTGPPIPIPPLKGDKYRNSTVI-----------------PYLE 466
            ||.||.::::||...||:.       .:|......|...::||:                 ..|.
Zfish   252 DPLKRATIKDIREHEWFKQ-------DLPGYLFPEDPSYDATVVDEEAVREVCEKFECTEAEVLS 309

  Fly   467 AYHYGTQEEDVYFTEHDV--NQELARQAAAAASEIRAKQSAAALAACHTYEPPSTS 520
            :.:.|..::.:....|.:  |:.:..|    |||.....|           ||::|
Zfish   310 SLYSGDPQDQLAVAYHLIIDNRRIMNQ----ASEFYLASS-----------PPTSS 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 93/263 (35%)
STKc_LKB1 178..435 CDD:271021 89/257 (35%)
prkaa2XP_700831.4 STKc_AMPK_alpha 13..268 CDD:270981 94/266 (35%)
S_TKc 16..268 CDD:214567 93/263 (35%)
UBA_AID_AAPK2 285..349 CDD:270587 13/78 (17%)
AMPKA_C_like 394..551 CDD:302605
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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