DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and sik1

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001119855.1 Gene:sik1 / 553465 ZFINID:ZDB-GENE-030131-9446 Length:811 Species:Danio rerio


Alignment Length:364 Identity:107/364 - (29%)
Similarity:176/364 - (48%) Gaps:56/364 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 VGKYIMGDVLGEGSYGKVKEAMNSEN-----------LCRLAVKILTKRKLRRIPNGEQNVTREI 222
            ||.|.:...||:|::..||.|.:...           ..::|:||:.|.:|...  ..:.:.||:
Zfish    23 VGFYEIIRTLGKGNFAVVKLARHKVTKTQAITTFYFIFMQVAIKIIDKTRLNSA--NLEKIYREV 85

  Fly   223 ALLKQLKHRHVVELVDVLYNEEKQKMYLVMEYCVGGLQEMIDY-QPDKRMPLFQAHGYFKQLVDG 286
            .::|.|.|.|:::|..|:  |.|..:|:|.||...|  ||.|| ..:.||...:|...|.|::..
Zfish    86 QIMKLLNHPHIIKLYQVM--ETKDMLYIVTEYAKNG--EMFDYLTSNGRMSENEARKKFWQILTA 146

  Fly   287 LEYLHSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANGH 351
            ::|.|...::|:|:|..||||..:..:|::|||..   :.:...:..:|..|||.:..||:..|.
Zfish   147 VDYCHRHHIVHRDLKTENLLLDANMNIKLADFGFG---NFYNAGEPLSTWCGSPPYAAPEVFEGK 208

  Fly   352 ETFAGFKVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAWLYEMDADFANLILGML 416
            | :.|.::||||.||.||.|..|..||:||::..|.:.:..|::..|   :.|..|..|||..||
Zfish   209 E-YEGPQLDIWSLGVVLYVLVCGSLPFDGDSLPALRQRVTEGRFRIP---FFMSQDCENLIRKML 269

  Fly   417 QADPSKRLSLQEIRHDTWF---RSAPVKT----------------GPPIPIPPLKG-DKYRNSTV 461
            ..||:||:::.:|:...|.   .|||.:|                .|.:.|....| |:.|....
Zfish   270 VVDPAKRITIAQIKQHRWMLADPSAPHQTLSLSLTDYNSNLGDYSEPVLGIMQTLGIDRQRTVES 334

  Fly   462 IPYLEAYHYGTQEEDVYF------TEHDVNQELARQAAA 494
            :......|:..    :|:      .||. :|:::||..|
Zfish   335 LQNSSYNHFSA----IYYLLLERVKEHR-SQQISRQCGA 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 87/274 (32%)
STKc_LKB1 178..435 CDD:271021 86/268 (32%)
sik1NP_001119855.1 STKc_SIK 25..288 CDD:270973 87/275 (32%)
S_TKc 26..288 CDD:214567 87/274 (32%)
UBA_SIK1 309..358 CDD:270591 8/52 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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