DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and PhKgamma

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_511129.3 Gene:PhKgamma / 32120 FlyBaseID:FBgn0011754 Length:560 Species:Drosophila melanogaster


Alignment Length:440 Identity:119/440 - (27%)
Similarity:201/440 - (45%) Gaps:70/440 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 DSQDIIYQQKKKSIKMVGKYIMGDVLGEGSYGKVKEAMNSENLCRLAVKILTKRKLRRIPNGEQN 217
            |.:|.:...|..:.....||...::||.|....|:..:..|.....|.||:.......  :||.|
  Fly     4 DEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKETGKEFAAKIIDLGATTE--SGETN 66

  Fly   218 ------VTR-EIALLKQ-LKHRHVVELVDVLYNEEKQKMYLVMEYCVGGLQEMIDY------QPD 268
                  .|| ||::|:| :.|.::::|.||.  |....::||.|.|..|  |:.||      ..:
  Fly    67 PYHMLEATRQEISILRQVMGHPYIIDLQDVF--ESDAFVFLVFELCPKG--ELFDYLTSVVTLSE 127

  Fly   269 KRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDIKPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTC 333
            |:     .....:|:.:|:||:|:..::|:|:||.|:||..:..:||:|||.|:||.   ..:..
  Fly   128 KK-----TRTIMRQIFEGVEYIHAKSIVHRDLKPENILLDENHNVKITDFGFAKQLQ---EGEKL 184

  Fly   334 TTGQGSPAFQPPEI--ANGHETFAGF--KVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQ 394
            |...|:|.:..||.  .|..|...|:  :||||:.||.::.|..|..||.......:|.||..|:
  Fly   185 TNLCGTPGYLAPETLKCNMFEGSPGYSQEVDIWACGVIMFTLLVGCPPFWHRKQMVMLRNIMEGK 249

  Fly   395 WE--APAWLYEMDADFANLILGMLQADPSKRLSLQEIRHDTWFRSAPVKTGPPIPIPPLKGDKYR 457
            :.  :|.|. ::..|..:||...|..|||:|::::|:....:|....:......|.||:...:..
  Fly   250 YSFTSPEWA-DISEDPKDLIRKCLVVDPSQRITVKEVLRHPFFNQMVLMGDRRHPAPPIAPAQTN 313

  Fly   458 NSTVI-PYLEAYHYGTQEED-------VYFTEHDVNQELARQAAAAASEIR------AKQSAAAL 508
            :..:: |...:|.:|.....       :|         .|.|::.:::.:|      |..|||: 
  Fly   314 SRHLLQPEASSYRFGQLNSSCAGAPNYLY---------CAPQSSYSSNRMRDGALDDAGASAAS- 368

  Fly   509 AACHTYEPPSTSAAAASNSLGNGSREEAPVKKKGSALKRRA--KKLTSCI 556
            |.||...|.:.|.:.|:|:..|.|         .|||...:  |.||:.:
  Fly   369 ATCHVMSPSNASNSYATNTTANTS---------NSALASASSHKTLTAMV 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 85/282 (30%)
STKc_LKB1 178..435 CDD:271021 84/276 (30%)
PhKgammaNP_511129.3 STKc_PhKG 19..291 CDD:270995 86/286 (30%)
S_TKc 23..291 CDD:214567 85/282 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452309
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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