DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lkb1 and par-1

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_995894.2 Gene:par-1 / 2768852 FlyBaseID:FBgn0260934 Length:1170 Species:Drosophila melanogaster


Alignment Length:614 Identity:160/614 - (26%)
Similarity:245/614 - (39%) Gaps:147/614 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AAGGAEAGGAGATGQMTVTTMEAQVKAAH-HHHLHHPTGGGAQHKVEEEEPDPVEDEMTVLLANK 76
            |:|.|..||.|:..|...|...:.....| |.|.|       ||                     
  Fly   125 ASGAAATGGVGSVSQGPATVSASAANTNHSHQHSH-------QH--------------------- 161

  Fly    77 NFHYDVASDL-DDDAFVELKEDTAQADDA---------GAGVGFYNPDELLLDDQPHPQVTWLDD 131
              |:.||::: .|.|.:........|..|         |:||.......:|.....||..     
  Fly   162 --HHHVANNMTTDGARLSSNNSAVVASSAINHHHHHTPGSGVAPTVNKNVLSTHSAHPSA----- 219

  Fly   132 DEIETLDRVTLDMG--NMFFNRVDSQDIIYQQKKKSIKM--------VGKYIMGDVLGEGSYGKV 186
                ...|.:...|  ||             |.:.|..|        :|||.:...:|:|::.||
  Fly   220 ----IKQRTSSAKGSPNM-------------QMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKV 267

  Fly   187 KEAMNSENLCRLAVKILTKRKLRRIPNGEQNVTREIALLKQLKHRHVVELVDVLYNEEKQKMYLV 251
            |.|.:......:|:||:.|.:|.  |...|.:.||:.::|.|.|.::|:|..|:  |.::.:||:
  Fly   268 KLAKHLPTGKEVAIKIIDKTQLN--PGSLQKLFREVRIMKMLDHPNIVKLFQVI--ETEKTLYLI 328

  Fly   252 MEYCVGGLQEMIDYQP-DKRMPLFQAHGYFKQLVDGLEYLHSCRVIHKDIKPGNLLLSLDQTLKI 315
            |||..||  |:.||.. ..||...:|...|:|:|..::|.|..|:||:|:|..||||..:..:||
  Fly   329 MEYASGG--EVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRIIHRDLKAENLLLDSELNIKI 391

  Fly   316 SDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANGHETFAGFKVDIWSSGVTLYNLATGQYPFEG 380
            :|||.:.:   |.|.....|..|||.:..||:..| :.:.|.:||:||.||.||.|.:|..||:|
  Fly   392 ADFGFSNE---FTPGSKLDTFCGSPPYAAPELFQG-KKYDGPEVDVWSLGVILYTLVSGSLPFDG 452

  Fly   381 DNIYRLLENIGRGQWEAPAWLYEMDADFANLILGMLQADPSKRLSLQEIRHDTW----FRSAPVK 441
            ..:..|.|.:.||::..|   :.|..|..||:...|..:|:||.||:.|..|.|    |....:|
  Fly   453 STLRELRERVLRGKYRIP---FYMSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELK 514

  Fly   442 --------TGPPIPIPPLKGDKYRNSTVIPYLEAYHYGTQEEDVYFT-------EHDVNQELARQ 491
                    ...|..|..|....|..|.:...|....|    :||:.|       ..|...:.:|.
  Fly   515 PYIEPKADLADPKRIEALVAMGYNRSEIEASLSQVRY----DDVFATYLLLGRKSTDPESDGSRS 575

  Fly   492 AAAAASEIRAKQSAAALAACHTYEPP-----------------------------STSAAAASNS 527
            .::.:....:...|.|.|...:.:.|                             :.:.|||:.:
  Fly   576 GSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRASSGVGPTNAAATVAAATGA 640

  Fly   528 LG--------NGSREEAPVKKKGSALKRR 548
            :|        |.:...|.....||..||:
  Fly   641 VGAVNPSNNYNAAGSAADRASVGSNFKRQ 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 96/267 (36%)
STKc_LKB1 178..435 CDD:271021 95/261 (36%)
par-1NP_995894.2 STKc_MARK 252..504 CDD:270974 96/264 (36%)
S_TKc 253..504 CDD:214567 95/263 (36%)
UBA_MARK_Par1 525..563 CDD:270522 10/41 (24%)
MARK1-3_C 839..936 CDD:213381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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