DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and sad-1

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001076760.1 Gene:sad-1 / 181471 WormBaseID:WBGene00004719 Length:914 Species:Caenorhabditis elegans


Alignment Length:422 Identity:126/422 - (29%)
Similarity:206/422 - (48%) Gaps:58/422 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 MGNMFFNRVDSQDIIYQQKKKSIKMVGKYIMGDVLGEGSYGKVKEAMNSENLCRLAVKILTKRKL 208
            :.|...:::.|::|:..:.....:..|.|.:...||:|..|.||...:.....::|:||:.|.||
 Worm    19 VNNELSSKIMSENIVSTRPVAQAQYCGPYKLEKTLGKGQTGLVKTGTHCITGRKVAIKIVNKEKL 83

  Fly   209 RRIPNGEQNVTREIALLKQLKHRHVVELVDVLYNEEKQKMYLVMEYCVGGLQEMIDYQPDK-RMP 272
            ..  :..|.|.||||::|.::|.||:.|.||.  |.|:.:||::|:..||  |:.||...| |:.
 Worm    84 SE--SVLQKVEREIAIMKLIEHPHVLHLYDVY--ENKKYLYLLLEHVSGG--ELFDYLVRKGRLM 142

  Fly   273 LFQAHGYFKQLVDGLEYLHSCRVIHKDIKPGNLLLSLDQTLKISDFGVAE-QLDLFAPDDTCTTG 336
            ..:|..:|:|::..|::.|:..:.|:|:||.||||.....:|::|||:|. |::....:.:|   
 Worm   143 SKEARKFFRQIISALDFCHAHNICHRDLKPENLLLDERNNIKVADFGMASLQVEGSMLETSC--- 204

  Fly   337 QGSPAFQPPEIANGHETFAGFKVDIWSSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAWL 401
             |||.:..||:..| |.:.|.|.|:||.||.||.|..|..||:.||:..|||.:.||.:..|   
 Worm   205 -GSPHYACPEVIRG-EKYDGRKADVWSCGVILYALLVGALPFDDDNLRNLLEKVKRGVFHIP--- 264

  Fly   402 YEMDADFANLILGMLQADPSKRLSLQEIRHDTWFRSAPVKTGPPIPIP--------PLKGD---- 454
            :.:.||..:|:..|::.||.||.||.::....|. |...|..|.:.:|        .:.|:    
 Worm   265 HFVPADVQSLLRAMIEVDPGKRYSLADVFKHPWV-SGTTKADPELELPMSQVVQTHVIPGEDSID 328

  Fly   455 -------------KYRNSTVIPYLEAYHYGTQEEDVYFTEHDVNQELARQAAAAASEIRAKQSAA 506
                         |.:...:...|...|  ..|:.|||...|  ::..|.|....:||..:    
 Worm   329 PDVLRHMNCLGCFKDKQKLINELLSPKH--NTEKMVYFLLLD--RKRRRPAQEDDTEIVLR---- 385

  Fly   507 ALAACHTYEPPS--TSAAAAS----NSLGNGS 532
              .|....:||.  |.::..|    .|:.:||
 Worm   386 --GAAQNNDPPKKRTDSSRTSRYPMGSIADGS 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 96/264 (36%)
STKc_LKB1 178..435 CDD:271021 95/258 (37%)
sad-1NP_001076760.1 STKc_BRSK1_2 45..298 CDD:270983 97/266 (36%)
S_TKc 47..298 CDD:214567 96/264 (36%)
UBA_BRSK 327..379 CDD:270525 10/55 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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