DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkb1 and brsk2b

DIOPT Version :9

Sequence 1:NP_001163606.1 Gene:Lkb1 / 41673 FlyBaseID:FBgn0038167 Length:567 Species:Drosophila melanogaster
Sequence 2:XP_009301700.1 Gene:brsk2b / 100149571 ZFINID:ZDB-GENE-100422-3 Length:886 Species:Danio rerio


Alignment Length:333 Identity:114/333 - (34%)
Similarity:176/333 - (52%) Gaps:35/333 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   169 VGKYIMGDVLGEGSYGKVKEAMNSENLCRLAVKILTKRKLRRIPNGEQNVTREIALLKQLKHRHV 233
            ||.|.:...||:|..|.||..::.....::|:||:.:.||..  :....|.||||:||.::|.||
Zfish    17 VGPYRLEKTLGKGQTGLVKLGIHCVTCQKVAIKIVNREKLSE--SVLMKVEREIAILKLIEHPHV 79

  Fly   234 VELVDVLYNEEKQKMYLVMEYCVGGLQEMIDYQPDK-RMPLFQAHGYFKQLVDGLEYLHSCRVIH 297
            ::|.||.  |.|:.:|||:|:..||  |:.||...| |:...:|..:|:|::..|::.||..:.|
Zfish    80 LKLHDVY--ENKKYLYLVLEHVSGG--ELFDYLVKKGRLTPKEARKFFRQIISALDFCHSHSICH 140

  Fly   298 KDIKPGNLLLSLDQTLKISDFGVAEQLDLFAPDDTCTTGQGSPAFQPPEIANGHETFAGFKVDIW 362
            :|:||.||||.....::|:|||:|   .|...|....|..|||.:..||:..| |.:.|.|.|:|
Zfish   141 RDLKPENLLLDEKNNIRIADFGMA---SLQVGDSLLETSCGSPHYACPEVIRG-EKYDGRKADVW 201

  Fly   363 SSGVTLYNLATGQYPFEGDNIYRLLENIGRGQWEAPAWLYEMDADFANLILGMLQADPSKRLSLQ 427
            |.||.|:.|..|..||:.||:..|||.:..|.:..|.::   ..|..||:.||::.|.:|||:|:
Zfish   202 SCGVILFALLVGALPFDDDNLRNLLEKVKLGVFHMPHFI---PPDCQNLLRGMIEVDATKRLTLE 263

  Fly   428 EIRHDTWFRSAPVKTGPPIPIPPLKGDKYRNST--VIP-YLEAYHY------------------G 471
            :|:..||:.....:..|..|:|.....:...||  :.| .||:.|.                  .
Zfish   264 QIQKHTWYIGGKNEPEPEQPVPRKVAIRTLPSTEDIDPDVLESMHSLGCFRDKNKLMKDLLSDDD 328

  Fly   472 TQEEDVYF 479
            .||:.:||
Zfish   329 NQEKMIYF 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lkb1NP_001163606.1 S_TKc 172..435 CDD:214567 98/263 (37%)
STKc_LKB1 178..435 CDD:271021 97/257 (38%)
brsk2bXP_009301700.1 STKc_BRSK1_2 18..271 CDD:270983 99/265 (37%)
S_TKc 20..270 CDD:214567 97/262 (37%)
UBA_BRSK 298..351 CDD:270525 8/39 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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