Protein Alignment B52 and PUB1

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_014382.1
• Gene: PUB1 / 855716
• SGDID: S000004961
• Length: 453
• Species: Saccharomyces cerevisiae
• Alignment Length: 267
• Identity: 63/267 - (23%)
• Similarity: 104/267 - (38%)
• Gaps: 47/267 - (17%)

  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI------KN-GYGFVEFEDYRDADDAVYELNGKELL 63
            :|||.|...:.|..|:::|:..|...:|.|      || .|.|||:....||:.|:..||||::.
Yeast    77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 141

  Fly    64 GERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLS 128
            ...|.:..|..:.:.|:.|.::...|           :.|.|....:     ||..::.....||
Yeast   142 NNIVKINWAFQSQQSSSDDTFNLFVG-----------DLNVNVDDET-----LRNAFKDFPSYLS 190

  Fly   129 SRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGR--RIHLVED 191
            ..|.|.      .|.|         ..|..|.|.|.|..|.:.|::.:...:||||  ||:....
Yeast   191 GHVMWD------MQTG---------SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240

  Fly   192 RRGGRSG------GGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKS 250
            |....:.      ..|.:.||..|..:| :.:.:.....:...:.:.:.||....|..|......
Yeast   241 RDNNNNNNYQQRRNYGNNNRGGFRQYNS-NNNNNMNMGMNMNMNMNMNNSRGMPPSSMGMPIGAM 304

  Fly   251 PVKSRSR 257
            |:.|:.:
Yeast   305 PLPSQGQ 311

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	25/74 (34%)
		RRM2_SRSF4_like	120..191	CDD:410012	19/72 (26%)
PUB1	NP_014382.1	RRM1_PUB1	77..150	CDD:410026	24/72 (33%)
		RRM2_PUB1	161..240	CDD:410031	24/109 (22%)
		RRM3_PUB1	341..414	CDD:410033