DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and RNA15

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:123 Identity:32/123 - (26%)
Similarity:47/123 - (38%) Gaps:26/123 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKEL 62
            ||:|.:||...|..:.......|...::.:        ..||.|:||.|...:..||..|||.: 
Yeast    20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ- 83

  Fly    63 LGERVVVEPARGTARGSNRD------RYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGP 114
            ||.|.:     .....||.|      :...:|....|.     |..|.|:.::|. ||
Yeast    84 LGSRFL-----KCGYSSNSDISGVSQQQQQQYNNINGN-----NNNNGNNNNNSN-GP 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 21/75 (28%)
RRM2_SRSF4_like 120..191 CDD:410012
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 21/79 (27%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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