DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and NOP6

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_010068.1 Gene:NOP6 / 851313 SGDID:S000002372 Length:225 Species:Saccharomyces cerevisiae


Alignment Length:183 Identity:36/183 - (19%)
Similarity:79/183 - (43%) Gaps:43/183 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 RRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQR 155
            |||.||     |.||.:..:|        :.:.|.:|...::..:|:::.:.:.    .|..:.|
Yeast    62 RRGRGG-----KGKNGKKGNR--------FIVFVGSLPRDITAVELQNHFKNSS----PDQIRLR 109

  Fly   156 RNEGV--VEFASLSDMKTAIEKLDD-------TELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSS 211
            .::|:  :||.:..| :|.|::..|       |.|..::|: ||     .:.||||:.:.|    
Yeast   110 ADKGIAFLEFDADKD-RTGIQRRMDIALLQHGTLLKEKKIN-VE-----LTVGGGGNSQER---- 163

  Fly   212 SSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNK 264
                  ..:.::::.:....|.:..::..:.|.:.|......:.:::....||
Yeast   164 ------LEKLKNKNIKLDEERKERLTKMINDGNQKKIAKTTATAAQTSGTDNK 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012 16/79 (20%)
NOP6NP_010068.1 NatA_aux_su <1..55 CDD:463630
RRM_Nop6 78..151 CDD:409834 15/78 (19%)
Blue background indicates that the domain is not in the aligned region.

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