Protein Alignment B52 and RNP1

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_013054.1
• Gene: RNP1 / 850680
• SGDID: S000003969
• Length: 249
• Species: Saccharomyces cerevisiae
• Alignment Length: 210
• Identity: 45/210 - (21%)
• Similarity: 86/210 - (40%)
• Gaps: 59/210 - (28%)

  Fly     6 VYVGGLPYGVRERDLERFFK-GYGRTRDILIK--------NGYGFVEFEDYRDADDAVYELNGKE 61
            :|||.||...|::||...|: .||:....::|        ..:.|:||::..:......::|||.
Yeast    37 LYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKKVKEKMNGKI 101

  Fly    62 LLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKN--KNSRSSSRYGP---PLRTEYR 121
            .:.|::|:|...                        ...||:  ||.:|:.:..|   ||.|. .
Yeast   102 FMNEKIVIENIL------------------------TKEEKSFEKNQKSNKKTAPDLKPLSTN-T 141

  Fly   122 LIVENLSSRVSWQDLK----------DYMR------QAGEVTYADAHKQRRNEGVVEFASLSDMK 170
            |.|:|:..:.:.:||.          :::|      :..:|.::|  :....|..::|.:|....
Yeast   142 LYVKNIPMKSTNEDLAKIFGVDPKNINFVRRELVDLRTNKVFFSD--EFHTGEAFIKFDNLGTGD 204

  Fly   171 TAIEKLDDTELNGRR 185
            :..:|.  .|..||:
Yeast   205 SIQKKC--REFKGRK 217

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	21/76 (28%)
		RRM2_SRSF4_like	120..191	CDD:410012	15/82 (18%)
RNP1	NP_013054.1	RRM	36..109	CDD:214636	19/71 (27%)
		PABP-1234	<37..>238	CDD:130689	45/210 (21%)