DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B52 and CSTF64

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_177325.2 Gene:CSTF64 / 843510 AraportID:AT1G71800 Length:461 Species:Arabidopsis thaliana


Alignment Length:105 Identity:32/105 - (30%)
Similarity:44/105 - (41%) Gaps:26/105 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYG--------RTRDILIKNGYGFVEFEDYRDADDA-----VYEL 57
            |:||.:||...|..|.......|        ..|:.....||||.|::|...|..|     .||:
plant    11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEI 75

  Fly    58 NGKELLGERV-VVEPARGTARGSNRDRYDDRYGGRRGGGG 96
            ||::|   || ..|..:||.:  .||:       .:||.|
plant    76 NGRQL---RVDFAENDKGTDK--TRDQ-------SQGGPG 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 25/81 (31%)
RRM2_SRSF4_like 120..191 CDD:410012
CSTF64NP_177325.2 RRM_CSTF2_RNA15_like 9..85 CDD:409832 24/76 (32%)
SF-CC1 <11..212 CDD:273721 32/105 (30%)
CSTF_C 419..454 CDD:464130
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.