DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and RBP47A

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001321909.1 Gene:RBP47A / 841384 AraportID:AT1G49600 Length:450 Species:Arabidopsis thaliana


Alignment Length:210 Identity:50/210 - (23%)
Similarity:75/210 - (35%) Gaps:43/210 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKG---------------YGRTRDILIKNGYGFVEFEDYRDADDAVY 55
            ::||.|...|.:..|...|.|               .||::      |||||.|.|..:...|:.
plant   215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSK------GYGFVRFGDENERSRAMT 273

  Fly    56 ELNGKELLGERV---VVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLR 117
            |:||......::   :..|.|..|.|...........|..||.|...:.::.||           
plant   274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNS----------- 327

  Fly   118 TEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELN 182
               .:.|..|.:.|:.:||.......|||..... ...:..|.|:||:....:.||..|:.|.:.
plant   328 ---TIFVGGLDADVTEEDLMQPFSDFGEVVSVKI-PVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388

  Fly   183 GRRIHLVEDRRGGRS 197
            ...:.|    ..|||
plant   389 KNTVRL----SWGRS 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 21/85 (25%)
RRM2_SRSF4_like 120..191 CDD:410012 17/70 (24%)
RBP47ANP_001321909.1 RRM1_SECp43_like 120..200 CDD:409780
RRM2_SECp43_like 212..291 CDD:409781 20/81 (25%)
RRM_SF 326..397 CDD:473069 19/89 (21%)
Blue background indicates that the domain is not in the aligned region.

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