DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and UBP1B

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_564018.1 Gene:UBP1B / 838309 AraportID:AT1G17370 Length:419 Species:Arabidopsis thaliana


Alignment Length:221 Identity:57/221 - (25%)
Similarity:84/221 - (38%) Gaps:55/221 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI----KNGYGFVEFEDYRDADDAVYELNGKELLGER 66
            ||||.:...|.|..|:..|.|.|......:    |:.||||.:.|.|.|..|:..|||:.|.|:.
plant    56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQP 120

  Fly    67 VVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRV 131
            :.|..|  .|.|...|                         :||        .:.:.|.:||..|
plant   121 IKVNWA--YASGQRED-------------------------TSS--------HFNIFVGDLSPEV 150

  Fly   132 SWQDLKDYMRQAGEVTYADAH-------KQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLV 189
            :  |...:...:...|.:||.       .:.|..|.|.|.:..|.:|||:::....|..|:|...
plant   151 T--DAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN 213

  Fly   190 EDRRGGRSGGGGGSGRGRSRSSSSRS 215
            ...:|..||..       .:||.|:|
plant   214 WATKGATSGED-------KQSSDSKS 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 26/71 (37%)
RRM2_SRSF4_like 120..191 CDD:410012 19/77 (25%)
UBP1BNP_564018.1 RRM1_PUB1 56..126 CDD:410026 25/69 (36%)
RRM2_PUB1 138..217 CDD:410031 19/80 (24%)
RRM3_PUB1 260..336 CDD:410033
Blue background indicates that the domain is not in the aligned region.

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