DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and RBM4B

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_113680.1 Gene:RBM4B / 83759 HGNCID:28842 Length:359 Species:Homo sapiens


Alignment Length:209 Identity:52/209 - (24%)
Similarity:83/209 - (39%) Gaps:57/209 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69
            ::::|.||....|:::...|:.||:..:..|...||||..||...|:||:..|:..:|.|..:.|
Human     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134
            |.:                             |||:..|:           :|.|.|:|...:.|
Human    68 EAS-----------------------------KNKSKAST-----------KLHVGNISPTCTNQ 92

  Fly   135 DLKDYMRQAGEV-------TYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDR 192
            :|:....:.|.|       .||..|.:|..:.|          .||..||:||..|:|:|:....
Human    93 ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAV----------EAIRGLDNTEFQGKRMHVQLST 147

  Fly   193 RGGRSGGGGGSGRG 206
            ...|:..|.|...|
Human   148 SRLRTAPGMGDQSG 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 22/68 (32%)
RRM2_SRSF4_like 120..191 CDD:410012 22/77 (29%)
RBM4BNP_113680.1 RRM1_RBM4 2..68 CDD:410018 20/64 (31%)
RRM2_RBM4 78..144 CDD:410019 22/86 (26%)
PTZ00368 <145..>181 CDD:173561 4/17 (24%)
ZnF_C2HC 161..176 CDD:197667 1/1 (100%)
Interaction with TNPO3. /evidence=ECO:0000250 196..359
Blue background indicates that the domain is not in the aligned region.

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