DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and AT5G09880

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_568220.1 Gene:AT5G09880 / 830848 AraportID:AT5G09880 Length:527 Species:Arabidopsis thaliana


Alignment Length:164 Identity:47/164 - (28%)
Similarity:73/164 - (44%) Gaps:19/164 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 GGGSGRGRSRSSSSRSRSRSRRRSRSRR-----SSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSR 259
            |.||.:.:..|.:.||....|:|....|     ....|..|||: ||||...::....:.|.|.|
plant    16 GAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSK-KSRGDGEENGGGKRDRERER 79

  Fly   260 SRSNKSRDVSKSKSKSHSR----TRSRSPK-RERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRD 319
            .||::.:|..:.|.:..||    .|.||.| |:|..|.:.|...:||...||.|:     ||..:
plant    80 HRSSRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSR-----SRREE 139

  Fly   320 RSASAENKSRSRSRSRSASPKNGNASPDRNNESM 353
            :......:...|.|.:...|:   |.|:|:..::
plant   140 KEPEVVERGSRRHRDKKDEPE---ADPERDQRTV 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774
RRM2_SRSF4_like 120..191 CDD:410012
AT5G09880NP_568220.1 SF-CC1 85..517 CDD:273721 25/94 (27%)
Blue background indicates that the domain is not in the aligned region.

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