Protein Alignment B52 and RS40

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_194280.1
• Gene: RS40 / 828654
• AraportID: AT4G25500
• Length: 350
• Species: Arabidopsis thaliana
• Alignment Length: 358
• Identity: 103/358 - (28%)
• Similarity: 154/358 - (43%)
• Gaps: 60/358 - (16%)

  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--LGERVV 68
            |:.|...|..||.||||.|:.||:...:.:|.|:.||..||.|||:||:..|:..|.  .|.|:.
plant     4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLR 68

  Fly    69 VEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENL-SSRVS 132
            ||..:           .:|.|.:|.|||.|        ||||    .:|....|.|.|. :....
plant    69 VEWTK-----------SERGGDKRSGGGSR--------RSSS----SMRPSKTLFVINFDADNTR 110

  Fly   133 WQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRI---HLVEDRRG 194
            .:||:.:....|::...   :.|||...:::.:..|...|::..::::|..:.|   :.|:|  .
plant   111 TRDLEKHFEPYGKIVNV---RIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD--D 170

  Fly   195 GRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKS------RSRSKSRGGRSKSKSPVK 253
            ...|.|....|.|.||...|.||.|..:.......:.|..|      :.|:....||.:|.||.|
plant   171 DARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYK 235

  Fly   254 SRSRSR---SRSNKSRDVSKSKSKSHSRTR-SRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRD 314
            ...|..   .|..:..|..:.:.:..|.|: ||||..:|:..|.:.|..|:||
plant   236 KSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKES------------ 288

  Fly   315 SRSRDRSASAENKSRSRSRSRSASPKNGNA-SP 346
              .|:.....|:....|.|||| ||:||.. ||
plant   289 --PRNGVGEVESPIERRERSRS-SPENGQVESP 318

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774	29/69 (42%)
		RRM2_SRSF4_like	120..191	CDD:410012	14/74 (19%)
RS40	NP_194280.1	RRM1_AtRSp31_like	2..73	CDD:409680	29/68 (43%)
		RRM_SF	98..167	CDD:473069	13/71 (18%)