Protein Alignment B52 and U1-70K

DIOPT Version :10

• Sequence 1: NP_788671.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Sequence 2: NP_190636.1
• Gene: U1-70K / 824230
• AraportID: AT3G50670
• Length: 427
• Species: Arabidopsis thaliana
• Alignment Length: 310
• Identity: 80/310 - (25%)
• Similarity: 126/310 - (40%)
• Gaps: 81/310 - (26%)

  Fly    98 RYNEKNKNSRSSSRYGPPLRTEY--RLIVENLSSRVSWQDLKDY--MRQAGEVTYADAHKQRRNE 158
            :|:..|..:.:    |.|.:|.:  ||..|:..|::. ::.:.|  :::...||....:|. :..
plant   123 KYDPNNDPNAT----GDPYKTLFVSRLNYESSESKIK-REFESYGPIKRVHLVTDQLTNKP-KGY 181

  Fly   159 GVVEFASLSDMKTAIEKLDDTELNGRRIHLVEDRRG--------GRSGGGGGSGR---------- 205
            ..:|:....|||.|.::.|..:::|||: ||:..||        .|.|||.|:.|
plant   182 AFIEYMHTRDMKAAYKQADGQKIDGRRV-LVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGE 245

  Fly   206 -------------GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSR----------GGRSK 247
                         .|.|....:||.:.:.|.|||..||.:.:.|||.:.|          |||.:
plant   246 QQPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQGGRDR 310

  Fly   248 SKSPVKSRSRSRSRSN---KSRDVSKSK-SKSHSRTRSRSPKRERD-----------SRSRSRSV 297
            .:...:.|.|:|.|.:   :.||..:.: |:.|.|.|||  |:|||           .|||.|..
plant   311 DRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDRDRSR--KKERDYEGGEYEHEGGGRSRERDA 373

  Fly   298 SKRESRSRSR----------SKSIHRDSRSR--DRSASAENKSRSRSRSR 335
            ..|.....:|          .:..||..:..  |.....|.|...||.||
plant   374 EYRGEPEETRGYYEDDQGDTDRYSHRYDKMEEDDFRYEREYKRSKRSESR 423

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B52	NP_788671.2	RRM1_SRSF4_like	5..74	CDD:409774
		RRM2_SRSF4_like	120..191	CDD:410012	19/74 (26%)
U1-70K	NP_190636.1	U1snRNP70_N	40..129	CDD:432406	1/5 (20%)
		RRM_snRNP70	137..227	CDD:409682	22/92 (24%)
		PRK12678	245..>395	CDD:237171	39/151 (26%)