DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Cstf2

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001421314.1 Gene:Cstf2 / 683927 RGDID:1596566 Length:624 Species:Rattus norvegicus


Alignment Length:185 Identity:44/185 - (23%)
Similarity:64/185 - (34%) Gaps:72/185 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRT--------RDILIKNGYGFVEFEDYRDADDAVYELNGKEL 62
            |:||.:||...|..|:..|...|..        |:.....||||.|::|...|..|:..|||:|.
  Rat    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly    63 LGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSS---------SRYG----- 113
            .|..:.|:.|.                          :||||....|         |.||     
  Rat    83 SGRALRVDNAA--------------------------SEKNKEELKSLGTGAPVIESPYGESISP 121

  Fly   114 --------------PP-----LRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYA 149
                          ||     |..:.:|.|:|     |.|:.::.:.|..::.||
  Rat   122 EDAPESISKAVASLPPEQMFELMKQMKLCVQN-----SPQEARNMLLQNPQLAYA 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 25/75 (33%)
RRM2_SRSF4_like 120..191 CDD:410012 8/30 (27%)
Cstf2NP_001421314.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/101 (25%)
CSTF2_hinge 112..191 CDD:433869 14/65 (22%)
CSTF_C 580..620 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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