DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and SNRNP70

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_003080.2 Gene:SNRNP70 / 6625 HGNCID:11150 Length:437 Species:Homo sapiens


Alignment Length:391 Identity:95/391 - (24%)
Similarity:131/391 - (33%) Gaps:125/391 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VYVGGLPYGVRERDLERFFKGYGRTRDILI--------KNGYGFVEFEDYRDADDAVYELNGKEL 62
            ::|..:.|...|..|.|.|:.||..:.|.:        ..||.|:|:|..||...|....:||::
Human   105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169

  Fly    63 LGERVVVEPARG-TARGSNRDRYDDRYGGRRGGGGG---RYNEKNKNSRSSSRYGP-PLRTEYRL 122
            .|.||:|:..|| |.:|....|.....||.|.||..   |::.::..||...|.|| ||      
Human   170 DGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPL------ 228

  Fly   123 IVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIH 187
                                        .|:.|                                
Human   229 ----------------------------PHRDR-------------------------------- 233

  Fly   188 LVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPV 252
               ||           .|.|.|...||.|.:.|.|.|| ||...|.:||||.|....||:.:|..
Human   234 ---DR-----------DRERERRERSRERDKERERRRS-RSRDRRRRSRSRDKEERRRSRERSKD 283

  Fly   253 KSRSRSRSRSNKSRDVSKSKSKSHSRTRS-----------------------------RSPKRER 288
            |.|.|.| ||::||:.::.:.:.....|.                             ..|:.:.
Human   284 KDRDRKR-RSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG 347

  Fly   289 DSRSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNNESM 353
            ..|.|.|..|.|..|.|.|.:...|| |.|:.........|.|..:|.......|......|:|.
Human   348 RDRDRERRRSHRSERERRRDRDRDRD-RDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSR 411

  Fly   354 D 354
            |
Human   412 D 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 23/75 (31%)
RRM2_SRSF4_like 120..191 CDD:410012 2/70 (3%)
SNRNP70NP_003080.2 U1snRNP70_N 3..94 CDD:432406
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..79
Required for interaction with U1 RNA. /evidence=ECO:0000269|PubMed:2467746 92..202 31/96 (32%)
RRM_snRNP70 102..187 CDD:409682 26/81 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..437 68/309 (22%)
Blue background indicates that the domain is not in the aligned region.

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