DRSC/TRiP Functional Genomics Resources

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Protein Alignment B52 and Srsf4

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_001356237.1 Gene:Srsf4 / 57317 MGIID:1890577 Length:496 Species:Mus musculus


Alignment Length:368 Identity:192/368 - (52%)
Similarity:225/368 - (61%) Gaps:73/368 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKN 103
            ||||||:|.|||||||||||||:|.||||:||.|||..|       |..||..|.|.|.|.:.::
Mouse    42 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRR-------DGSYGSGRSGYGYRRSGRD 99

  Fly   104 KNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSD 168
            |       ||||.||||||||||||||.||||||||||||||||||||||.|:||||:||.|.||
Mouse   100 K-------YGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSD 157

  Fly   169 MKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSS-------SRSR------SRSR 220
            ||.|:||||.||:|||:|.||||:.|.|........|..|||.|       ||||      |.|:
Mouse   158 MKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSK 222

  Fly   221 RRSRSRRSSHSRSKSRSR--SKSRGGRSKSKSPVK-SRSRSRSRSNKSRDVSKSKSKSHS----- 277
            .|||||..||||||||||  |:||..:.||:||.| ::||||||   |.|.|:||||.|:     
Mouse   223 SRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSR---SPDKSRSKSKDHAEDKLQ 284

  Fly   278 ------RTRSRSPKRERDSRSRSRSVSKR--------------------------ESRSRSRSKS 310
                  :.:|.||.| .||:|||||..:|                          :||||||||.
Mouse   285 NNDSAGKAKSHSPSR-HDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSKV 348

  Fly   311 IHRD-SRSRD-RSASAENKSRSRSRSRSASPKNGNASPDRNNE 351
            ..|. |||:| |.....::..|||||||.|.::...|..|:::
Mouse   349 GSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSK 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 28/34 (82%)
RRM2_SRSF4_like 120..191 CDD:410012 58/70 (83%)
Srsf4NP_001356237.1 RRM_SF <42..92 CDD:473069 36/56 (64%)
RRM2_SRSF4_like 109..180 CDD:410012 58/70 (83%)
U2AF_lg 250..>361 CDD:273727 44/114 (39%)

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