DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B52 and RBM28

DIOPT Version :10

Sequence 1:NP_788671.2 Gene:B52 / 41670 FlyBaseID:FBgn0004587 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_060547.2 Gene:RBM28 / 55131 HGNCID:21863 Length:759 Species:Homo sapiens


Alignment Length:394 Identity:81/394 - (20%)
Similarity:139/394 - (35%) Gaps:80/394 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIK--------NGYGFVEFEDYRDADDAVYEL 57
            |.|..::||.||...|...||..|...|..:...:.        .|:|:|.|....|...|:.|:
Human     1 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65

  Fly    58 NGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY-- 120
            ...|  |.::.|..|:...|...:::                 .||:||....:.....:.:.  
Human    66 TTFE--GCKINVTVAKKKLRNKTKEK-----------------GKNENSECPKKEPKAKKAKVAD 111

  Fly   121 ---RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHK----QRRNEGVVEFASLSDMKTAIEKLDD 178
               |||:.|||.:.|..|||....|.|.|...:..:    :.|..|.|:|.:|.:...|::.::.
Human   112 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNM 176

  Fly   179 TELNGRRI----HLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSK----- 234
            .|:.||.:    .:.:|:.....   ..|..|..:|..|:.:...:::.|..........     
Human   177 KEIKGRTVAVDWAVAKDKYKDTQ---SVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDD 238

  Fly   235 ---------SRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSPKRERDS 290
                     .....:.....||...||:.:.|:..|.      :.:||..||         |.||
Human   239 DDDEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRP------APAKSSDHS---------EEDS 288

  Fly   291 -RSRSRSVSKRESRSRSRSKSIHRDSRSRDRSASAENKSRSRSRSRSASPKN---GNASPDRNNE 351
             ...|.|:...|..::|.:.:    ....|::....||.:.:..|.....|.   .|.|.|...|
Human   289 DLEESDSIDDGEELAQSDTST----EEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEE 349

  Fly   352 SMDD 355
            .:.:
Human   350 ELGE 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B52NP_788671.2 RRM1_SRSF4_like 5..74 CDD:409774 20/76 (26%)
RRM2_SRSF4_like 120..191 CDD:410012 22/83 (27%)
RBM28NP_060547.2 RRM1_RBM28_like 5..81 CDD:409847 20/77 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..105 4/37 (11%)
RRM2_RBM28_like 115..190 CDD:409848 22/74 (30%)
PABP-1234 126..721 CDD:130689 48/250 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..330 25/147 (17%)
RRM3_RBM28_like 335..417 CDD:409849 5/19 (26%)
RRM4_RBM28_like 487..581 CDD:409850
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..759
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.